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colData
•
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0
votes
6
replies
455
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Once again a "Model matrix not full rank"
DESeq2
design
coldata
updated 11 weeks ago by
swbarnes2
★ 1.4k • written 12 weeks ago by
arfranco
▴ 130
0
votes
2
replies
651
views
Heat Map
ColData
pheatmap
DESeq2
written 13 months ago by
dania.khalid
• 0
0
votes
1
reply
1.2k
views
Rename colData column
SingleCellExperiment
colData
rename
updated 17 months ago by
Basti
▴ 780 • written 17 months ago by
achoppe
▴ 10
1
vote
0
replies
635
views
Understanding ColData in BiSeq
BiSeq
Coldata
4.2 years ago
akhaira
• 0
2
votes
2
replies
1.6k
views
How to extract factor levels of coldata from deseq object?
deseq2
levels
factor
colData
updated 5.4 years ago by
Michael Love
42k • written 5.4 years ago by
ariel
▴ 20
4
votes
8
replies
43k
views
What is colData? How do I make one?
deseq2
coldata
updated 5.7 years ago by
swbarnes2
★ 1.4k • written 5.7 years ago by
mjrarcher
▴ 10
1
vote
7
replies
3.3k
views
Data from ##SAMPLE lines in VCF?
variantannotation
coldata
updated 5.8 years ago by
Valerie Obenchain
★ 6.8k • written 5.8 years ago by
lvclark
▴ 10
0
votes
6
replies
3.7k
views
DESeq2: handling NA values in colData
deseq2
coldata
NA
updated 6.0 years ago by
Michael Love
42k • written 6.0 years ago by
t.kuilman
▴ 170
0
votes
3
replies
1.5k
views
How to create the colData for a complex experiment
multiassayexperiment
colData
updated 6.6 years ago by
Levi Waldron
★ 1.1k • written 6.6 years ago by
Lluís Revilla Sancho
▴ 730
9 results • Page
1 of 1
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
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maltethodberg
▴ 180
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Michael Love
42k
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Leonardo Collado Torres
★ 1.1k
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51k
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