Bioconductor ColData

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1.3k

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DESeq2 design coldata

updated 21 months ago by swbarnes2 ★ 1.4k • written 21 months ago by arfranco ▴ 130

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1.4k

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ColData pheatmap DESeq2

written 2.6 years ago by dania.khalid • 0

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2.2k

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SingleCellExperiment colData rename

updated 3.0 years ago by Basti ▴ 780 • written 3.0 years ago by achoppe ▴ 10

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977

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BiSeq Coldata

5.7 years ago akhaira • 0

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2.4k

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deseq2 levels factor colData

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by ariel ▴ 20

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50k

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deseq2 coldata

updated 7.2 years ago by swbarnes2 ★ 1.4k • written 7.2 years ago by mjrarcher ▴ 10

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4.8k

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variantannotation coldata

updated 7.4 years ago by Valerie Obenchain ★ 6.8k • written 7.4 years ago by lvclark ▴ 10

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5.0k

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deseq2 coldata NA

updated 18 months ago by Michael Love 43k • written 7.5 years ago by t.kuilman ▴ 170

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2.2k

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multiassayexperiment colData

updated 8.2 years ago by Levi Waldron ★ 1.1k • written 8.2 years ago by Lluís Revilla Sancho ▴ 760

9 results • Page 1 of 1

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Comment: GOseq Probability Weight Function bad fit by a2sahaaaq2c • 0

the mobile gaming world offers a different kind of strategic challenge. Many users today are shifting from heavy data processing to lighthe…

Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0

Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…

Comment: DiffBind plot.profile error by a2sahaaaq2c • 0

To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…

Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

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Popular Question to Guido Hooiveld ★ 4.1k