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colData
•
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0
votes
2
replies
539
views
Heat Map
ColData
pheatmap
DESeq2
written 10 months ago by
dania.khalid
• 0
0
votes
1
reply
997
views
Rename colData column
SingleCellExperiment
colData
rename
updated 14 months ago by
Basti
▴ 780 • written 14 months ago by
achoppe
▴ 10
1
vote
0
replies
570
views
Understanding ColData in BiSeq
BiSeq
Coldata
3.9 years ago
akhaira
• 0
2
votes
2
replies
1.4k
views
How to extract factor levels of coldata from deseq object?
deseq2
levels
factor
colData
updated 5.2 years ago by
Michael Love
41k • written 5.2 years ago by
ariel
▴ 20
4
votes
8
replies
42k
views
What is colData? How do I make one?
deseq2
coldata
updated 5.4 years ago by
swbarnes2
★ 1.3k • written 5.4 years ago by
mjrarcher
▴ 10
1
vote
7
replies
3.1k
views
Data from ##SAMPLE lines in VCF?
variantannotation
coldata
updated 5.6 years ago by
Valerie Obenchain
★ 6.8k • written 5.6 years ago by
lvclark
▴ 10
0
votes
6
replies
3.5k
views
DESeq2: handling NA values in colData
deseq2
coldata
NA
updated 5.7 years ago by
Michael Love
41k • written 5.7 years ago by
t.kuilman
▴ 170
0
votes
3
replies
1.4k
views
How to create the colData for a complex experiment
multiassayexperiment
colData
updated 6.4 years ago by
Levi Waldron
★ 1.1k • written 6.4 years ago by
Lluís Revilla Sancho
▴ 730
8 results • Page
1 of 1
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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
by
Guangchuang Yu
★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference
by
andrebolerbarros
▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
ATpoint
★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference
by
ATpoint
★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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ATpoint
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Gordon Smyth
50k
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i.sudbery
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Michael Love
41k
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shepherl
3.8k
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