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MLSeq
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MLSeq package: using z-score normalized data as input?
MLSeq
8.5 years ago
philipp24
▴ 30
0
votes
3
replies
1.5k
views
MLSeq Mathematical Concepts
Classification
edgeR
DESeq
MLSeq
Classification
edgeR
DESeq
MLSeq
updated 10.0 years ago by
Wolfgang Huber
★ 13k • written 10.0 years ago by
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.6k
views
Hierarchical Random Forest classifier
rnaseq
machinelearning
random forest
mlseq
8.2 years ago
anthony.hawkins
▴ 10
0
votes
0
replies
947
views
MLSeq plot results
MLSeq
7.4 years ago
jonessara770
▴ 10
2
votes
1
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1.3k
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Data preparation and Machine learning on time course RNAseq data
machine learning
deep learning
RNAseq
MLSeq
5.3 years ago
A
▴ 40
5 results • Page
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Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
numbers 1 to 3 represent observations and/or replicates Control is control. The three controls are shown as Control_1, control_2 and Contr…
Answer: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
The time and treatment are essentially the same thing, so you cannot have both in the model at the same time. Do the numbers 1:3 represent …
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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