Bioconductor Mlseq

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machine learning deep learning RNAseq MLSeq

4.9 years ago A ▴ 40

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869

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MLSeq

7.0 years ago jonessara770 ▴ 10

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1.4k

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rnaseq machinelearning random forest mlseq

7.8 years ago anthony.hawkins ▴ 10

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1.1k

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MLSeq

8.1 years ago philipp24 ▴ 30

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Classification edgeR DESeq MLSeq Classification edgeR DESeq MLSeq

updated 9.6 years ago by Wolfgang Huber 13k • written 9.6 years ago by Dario Strbenac ★ 1.5k

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Comment: How to read fcs3.2 files by James W. MacDonald 64k

You need to supply more information than saying you tried things and they didn't work. Show code with error messages.

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Looks good then.

Answer: DESeq2 : stat or lfcshrink for GSEA analysis by Michael Love 41k

There have been many threads on this support site on this topic.

Answer: Filter genes by expression for voomLmFit by James W. MacDonald 64k

`voomLmFit` is meant to be able to correctly specify the degrees of freedom when you have lots of zeros (as well as iterating if you use `d…

Comment: How to get DMR for Infinium methylation EPIC v2 by James W. MacDonald 64k

You want to make sure that you already have a `GenomicRatioSet` that you pass into `cpg.annotate`. ``` eset <- preprocessFunnorm(dat) myAn…

Votes

Answer: SingleR annotation of several slots/patients

Answer: List of Deprecated Packages for Bioc3.18

Attempting to import SBML file using R

Answer: RNASeq time course analysis, missing time points for control

Answer: biomaRt not working - lazy table error

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Teacher to Mike Smith ★ 6.2k