Bioconductor Mlseq

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machine learning deep learning RNAseq MLSeq

7.2 years ago A ▴ 60

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1.3k

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MLSeq

9.3 years ago jonessara770 ▴ 10

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2.1k

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rnaseq machinelearning random forest mlseq

10.1 years ago anthony.hawkins ▴ 10

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1.7k

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MLSeq

10.4 years ago • updated 10.3 years ago philipp24 ▴ 30

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2.1k

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Classification edgeR DESeq MLSeq Classification edgeR DESeq MLSeq

updated 11.9 years ago by Wolfgang Huber ★ 13k • written 11.9 years ago by Dario Strbenac ★ 1.6k

5 results • Page 1 of 1

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Comment: GSEA error by Adithi • 0

Thank you so much. That makes perfect sense to me. I will work on this.

Comment: tximeta cannot open annotation gtf? by Michael Love 43k

Yes, so this is the same type of error you would get if you tried to assemble a *SummarizedExperiment* manually with tximport + GTF process…

Answer: tximeta cannot open annotation gtf? by ATpoint ★ 5.0k

> Timeout of 60 seconds was reached You have to increase the default timeout limits for downloads, `options(timeout=3600)`. GENCODE serve…

Answer: GSEA error by James W. MacDonald 68k

At a very high level, the way non-model organisms are annotated is by using blast to find orthologs in other species that are well annotate…

Comment: Unable to find ENTREZ IDs by Adithi • 0

Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…

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Answer: GSEA error

Answer: OrgDb for maize

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

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