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MethylAid
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Problem with MethylAid ("Cannot get Manifest object for an 'Unknown' array") and Epicv2
minfi
EPICv2manifest
MethylAid
17 months ago
pcibin
• 0
0
votes
1
reply
1.1k
views
Error starting MethylAid visualize function
methylaid
updated 8.2 years ago by
mviterson
▴ 10 • written 8.2 years ago by
amashchak
• 0
1
vote
1
reply
2.8k
views
Trouble understanding how to load my idat files into MethylAid.
MethylAid
updated 10.2 years ago by
m.van_iterson
▴ 20 • written 10.2 years ago by
jdangelo
• 0
1
vote
13
replies
3.1k
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MethylAid package visualize function not opening a web browser
illimina 450k methylation
methyanalysis
methylaid
10.2 years ago
jdangelo
• 0
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Answer: NUPOP usage
by
shepherl
4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker?
by
fnfgame
• 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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