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methyanalysis
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475
views
Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression
methyAnalysis
MethylationArray
2.9 years ago
coobzie
• 0
1
vote
2
replies
1.1k
views
Methylation data visualization using methyAnalysis with minfi
methylation
microarray
illumina
minfi
methyanalysis
updated 4.8 years ago by
Ou, Jianhong
★ 1.3k • written 4.8 years ago by
Adam_M
• 0
0
votes
0
replies
610
views
methyAnalysis - library(methyAnalysis) hangs when talking to Internet
methyanalysis
5.6 years ago
mcahn
• 0
2
votes
4
replies
2.3k
views
Problem in installing Bioconductor packages due to "IRanges"
lumi
methylumi
methyAnalysis
5.7 years ago
topijush
▴ 10
0
votes
0
replies
696
views
Recurring error in smoothMethygenoset step for MethyAnalysis
methyanalysis
5.8 years ago
charleneee95
• 0
1
vote
9
replies
3.2k
views
strange results from differential methylation analysis using limma
limma
methylation
methyanalysis
IMA
updated 16 months ago by
Sean Davis
21k • written 6.5 years ago by
RC
• 0
0
votes
0
replies
852
views
methyAnalysis: heatmapByChromosome not works
methyAnalysis
7.0 years ago
Shicheng Guo
• 0
0
votes
1
reply
808
views
problem with identifySigDMR command
methyAnalysis
7.2 years ago • updated 7.1 years ago
yuping.zhang
• 0
0
votes
0
replies
1.6k
views
methyAnalysis error with example data
methyanalysis
7.3 years ago
Tom
▴ 10
4
votes
10
replies
4.1k
views
Illumina MethylationEPIC vs. 450K
methylumi
minfi
illuminahumanmethylation450k.db
450k
methyanalysis
updated 7.6 years ago by
Peter Hickey
▴ 650 • written 7.6 years ago by
Ahdee
▴ 50
1
vote
13
replies
1.9k
views
MethylAid package visualize function not opening a web browser
illimina 450k methylation
methyanalysis
methylaid
8.0 years ago
jdangelo
• 0
0
votes
1
reply
3.8k
views
methyAnalysis M values and Beta Values
methyAnalysis
methyanalysis
450k
updated 8.6 years ago by
Pan Du
▴ 80 • written 8.6 years ago by
andrew.j.skelton73
▴ 370
1
vote
5
replies
1.1k
views
Understanding methyAnalysis Results
methyAnalysis
methyanalysis
methylation
illuminahumanmethylation450k.db
updated 8.6 years ago by
Pan Du
▴ 80 • written 8.6 years ago by
andrew.j.skelton73
▴ 370
0
votes
0
replies
1.5k
views
DMR identification: minfi speed, memory problems
Annotation
convert
minfi
methyAnalysis
bumphunter
Annotation
convert
minfi
methyAnalysis
9.6 years ago
Allegra Petti
▴ 120
0
votes
8
replies
1.9k
views
methyAnalysis for DMR identification
convert
methyAnalysis
convert
methyAnalysis
updated 9.6 years ago by
Giovanni Calice
▴ 160 • written 9.6 years ago by
Guest User
★ 12k
0
votes
6
replies
2.7k
views
DMR identification: minfi speed, memory problems
Annotation
convert
minfi
methyAnalysis
bumphunter
Annotation
convert
minfi
methyAnalysis
updated 9.6 years ago by
James W. MacDonald
63k • written 9.6 years ago by
Guest User
★ 12k
0
votes
0
replies
1.5k
views
Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer
charm
minfi
methyAnalysis
Cancer
charm
minfi
methyAnalysis
10.6 years ago
Ed Schwalbe
▴ 20
0
votes
2
replies
1.1k
views
genoset:::initGenoSet
methyAnalysis
methyAnalysis
updated 10.6 years ago by
Pan Du
▴ 440 • written 10.6 years ago by
Schalkwyk, Leonard
▴ 20
0
votes
2
replies
1.6k
views
Loading Data into MethyAnalysis
Microarray
methyAnalysis
Microarray
methyAnalysis
updated 10.7 years ago by
Pan Du
▴ 440 • written 10.7 years ago by
Guest User
★ 12k
0
votes
1
reply
1.0k
views
methyAnalysis methyGenoSet function
methyAnalysis
methyAnalysis
updated 10.7 years ago by
Sean Davis
21k • written 10.7 years ago by
Giancarlo
▴ 10
0
votes
0
replies
1.0k
views
importing data problem with methyAnalysis package
Biophysics
Annotation
Preprocessing
annotate
lumi
methyAnalysis
Biophysics
Annotation
lumi
10.7 years ago
Pan Du
▴ 440
21 results • Page
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Comment: Speeding up of DelayedArray::write_block()
by
Koki
▴ 10
Thank you, I have a very clear understanding of the situation. > COO_Sparse_HDF5RealizationSink(), writeHDF5SparseArray(), COO_H5SparseArr…
Comment: Speeding up of DelayedArray::write_block()
by
Koki
▴ 10
There are a few places inside my `DelayedTensor` package that use `SparseArraySeed`. Will these stop working in next coming BioC 3.18, whe…
Comment: DelayedArray::read_sparse_block
by
Hervé Pagès
16k
No. But I will need to modify the `write_block()` method for TENxRealizationSink implemented in **HDF5Array** to make it handle blocks that…
Answer: ''Model_Matrix'' error
by
Gordon Smyth
48k
This is actually an error message from base R rather than from limma. The error says that `Group` contains 0 or 1 levels, so your assumptio…
Comment: Speeding up of DelayedArray::write_block()
by
Hervé Pagès
16k
> I don't know the details but do you mean using HDF5RealizationSink or TENxRealizationSink will make it possible to writing sparse multi-d…
Votes
Steps needed to change design (relevel factors) in DESeq2
Steps needed to change design (relevel factors) in DESeq2
Answer: DMRcate design
Answer: DMRcate design
Comment: DMRcate design
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