Showing : MultipleComparison • reset
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How to reduce the impact of one varaible in Deseq2 or edgeR for multivariate value analysis?
MultipleComparison edgeR DESeq2
written 2.1 years ago by • 0
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Troubles implementing LIMMA for paired samples (before/after treatment) comparaisons
GeneExpression R limma MultipleComparison
updated 3.4 years ago by 65k • written 3.4 years ago by • 0
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How to find differentially expressed proteins from multiple conditions (>2) using proDA?
Proteomics proDA MultipleComparison
8 months ago t.b.n.nguyen-9 • 0
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DESeq2 Multiple Pairwise Comparisons with Odd Set-up
MultipleComparison DESeq2
updated 23 months ago by 41k • written 23 months ago by • 0
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Multiple Testing When Using Multiple Contrasts/Comparisons in DESEQ2
MultipleComparison DESeq2 Genetics contrasts RNASeq
updated 9 months ago by 65k • written 9 months ago by • 0
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Correction for multiple comparison by DeSeq2 - treatment1 vs. control, treatment2 vs. control, ... treatment n vs. control
DESeq2 MultipleComparison r
updated 16 months ago by 41k • written 17 months ago by • 0
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DESeq2: Difference between two groups of conditions
factor DESeq2 MultipleComparison
updated 2.4 years ago by ★ 1.3k • written 2.4 years ago by • 0
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Multiple groups comparison using Linnorm
Linnorm DEG MultipleComparison
updated 6 months ago by • 0 • written 2.8 years ago by • 0
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Main effect on multiple comparisons in limma
limmaGUI lim MultipleComparison multip
updated 10 weeks ago by 50k • written 10 weeks ago by • 0
9 results • Page 1 of 1
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Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Michael Love 41k
Sorry, for questions about statistical analysis plan and interpretation of results, I recommend to work with a local statistician or someon…
Answer: Fold change calculation in Diffbind vs. DESEQ2? by Michael Love 41k
There was a recent DiffBind question on the support site that noticed the same thing, try searching recent DiffBind posts.
Answer: Timecourse RNASeq analysis by Michael Love 41k
There are many choices for time course, and we have an example in our workflow (rnaseqGene). Otherwise, I recommend to consult a local …
Answer: Padj "NA" with thousands of low count although the raw read counts are quite lar by Michael Love 41k
You can either turn off independent filtering in `results` or use `ihw` see the vignette.
Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0
Thanks Gordon for a detail guide! You have a great memory of time. GSVA also do differential express at pathway level (https://bioconductor…
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Comment: Why p value inconsistent when using different number of pathway score?
Nominations for Bioconductor Awards 2024!
Answer: Improving the design matrices vignette in RNAseq123
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
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