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MultipleComparison
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2
votes
17
replies
2.2k
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How to reduce the impact of one varaible in Deseq2 or edgeR for multivariate value analysis?
MultipleComparison
edgeR
DESeq2
written 2.1 years ago by
yuet
• 0
1
vote
4
replies
750
views
How to find differentially expressed proteins from multiple conditions (>2) using proDA?
Proteomics
proDA
MultipleComparison
8 months ago
t.b.n.nguyen-9
• 0
0
votes
3
replies
664
views
Multiple Testing When Using Multiple Contrasts/Comparisons in DESEQ2
MultipleComparison
DESeq2
Genetics
contrasts
RNASeq
updated 9 months ago by
James W. MacDonald
65k • written 10 months ago by
a26fd14e
• 0
1
vote
3
replies
967
views
Troubles implementing LIMMA for paired samples (before/after treatment) comparaisons
GeneExpression
R
limma
MultipleComparison
updated 3.4 years ago by
James W. MacDonald
65k • written 3.4 years ago by
Gwénolé
• 0
0
votes
1
reply
687
views
Multiple groups comparison using Linnorm
Linnorm
DEG
MultipleComparison
updated 6 months ago by
shunyip
• 0 • written 2.8 years ago by
awakumaya
• 0
0
votes
1
reply
665
views
Correction for multiple comparison by DeSeq2 - treatment1 vs. control, treatment2 vs. control, ... treatment n vs. control
DESeq2
MultipleComparison
r
updated 16 months ago by
Michael Love
41k • written 17 months ago by
ncorak
• 0
0
votes
1
reply
669
views
DESeq2: Difference between two groups of conditions
factor
DESeq2
MultipleComparison
updated 2.5 years ago by
swbarnes2
★ 1.3k • written 2.5 years ago by
diegocastano182
• 0
1
vote
1
reply
552
views
DESeq2 Multiple Pairwise Comparisons with Odd Set-up
MultipleComparison
DESeq2
updated 24 months ago by
Michael Love
41k • written 24 months ago by
Joshua
• 0
0
votes
1
reply
220
views
Main effect on multiple comparisons in limma
limmaGUI
lim
MultipleComparison
multip
updated 11 weeks ago by
Gordon Smyth
50k • written 11 weeks ago by
roger.moreno.justicia
• 0
9 results • Page
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Answer: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function?
by
Henrik Bengtsson
★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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