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2.5k
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EdgeR:Calculating differential expression within/between groups in nested designs
edger
nested
design matrix
differential expression
updated 9.2 years ago by
Aaron Lun
★ 28k • written 9.2 years ago by
Mauve
• 0
4
votes
5
replies
1.8k
views
edgeR: estimating dispersion for nested designs
edger
nested
estimatedispersions
9.3 years ago
Mauve
• 0
4
votes
7
replies
1.2k
views
EdgeR between/within comparisons (3.5) with nested non-balanced data set
edgeR
nested
glm
glmQLFit
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
jcalis
▴ 10
0
votes
3
replies
1.1k
views
Is it possible to specify random nested factor in DEseq2?
nested
DESeq2
updated 2.3 years ago by
Michael Love
42k • written 2.4 years ago by
yampolsk
• 0
0
votes
3
replies
1.0k
views
Nested design- phyloseq_to_deseq
deseq2
Phyloseq
Nested
updated 4.1 years ago by
Michael Love
42k • written 4.1 years ago by
mpuli011
• 0
0
votes
3
replies
1.0k
views
DESeq2 - nested samples (individuals) - time course - conditions
deseq2
nested
de
updated 4.5 years ago by
Michael Love
42k • written 4.5 years ago by
gaio.transposon
• 0
1
vote
2
replies
782
views
Correct DESeq2 interaction design and results with paired and nested data
deseq2
Paired
Nested
updated 4.3 years ago by
Michael Love
42k • written 4.3 years ago by
julia.chariker
▴ 10
0
votes
1
reply
422
views
deseq2 nested multifactorial analysis
DESeq2
multifactorial
nested
updated 14 months ago by
Basti
▴ 780 • written 14 months ago by
jd
• 0
8 results • Page
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Marcel Ramos
690
`BiocManager` does not install local packages. It only installs Bioconductor, CRAN, and GitHub ones. You should install local packages w…
Comment: error running enricher from clusterprofiler
by
Yael
• 0
It worked!!! Thanks alot, i think something in the gene_list wasnt right... Thanks agian
Comment: Create protein sequences including variants from a VCF file
by
Yun
• 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization?
by
Daniel
• 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Votes
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
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