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NewWave
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Statistical test
NewWave
written 24 months ago by
mario
• 0
0
votes
1
reply
788
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Error in (function (classes, fdef, mtable) : Function 'raster' tag 'logical' cannot find an inheritance method
NewWave
updated 24 months ago by
shepherl
4.2k • written 24 months ago by
1135296741
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707
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error running exp2grn
NewWave
updated 2.2 years ago by
Fabricio Almeida-Silva
▴ 40 • written 2.3 years ago by
adriana
• 0
0
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featureCounts error Assertion failed: (NULL == pairer -> bam_margin_table -> appendix2), function SAM_pairer_finish_margin_table, file input-files.c,…
NewWave
2.2 years ago
Kilian
• 0
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2
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748
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Adding chromosome numbers to the respective gene ids of DESeq2 output file
NewWave
hgu133a2.db
updated 20 days ago by
MurrayMertz
• 0 • written 2.2 years ago by
roy23032
• 0
0
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13
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Spam:
7z password remover tool
mgu74bv2cdf
NewWave
hgu133a2.db
2.4 years ago
roma
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0
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14
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Spam:
ost to pst migration software
mgu74bv2cdf
NewWave
hgu133a2.db
2.4 years ago
roma
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2
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1.3k
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Extracting DEG from topTags
NewWave
updated 2.5 years ago by
Gordon Smyth
53k • written 2.5 years ago by
liujy4
• 0
0
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1
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727
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How to use txtimport and do differential expression
NewWave
updated 2.5 years ago by
James W. MacDonald
68k • written 2.5 years ago by
SuASNAVASCH
• 0
9 results • Page
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Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA
by
Gordon Smyth
53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR
by
James W. MacDonald
68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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