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Statistical test
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Error in (function (classes, fdef, mtable) : Function 'raster' tag 'logical' cannot find an inheritance method
NewWave
updated 2.0 years ago by 4.2k • written 2.0 years ago by • 0
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error running exp2grn
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featureCounts error Assertion failed: (NULL == pairer -> bam_margin_table -> appendix2), function SAM_pairer_finish_margin_table, file input-files.c,…
NewWave
2.2 years ago Kilian • 0
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Adding chromosome numbers to the respective gene ids of DESeq2 output file
NewWave hgu133a2.db
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Spam: 7z password remover tool
mgu74bv2cdf NewWave hgu133a2.db
2.4 years ago roma 0
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Spam: ost to pst migration software
mgu74bv2cdf NewWave hgu133a2.db
2.4 years ago roma 0
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Extracting DEG from topTags
NewWave
updated 2.5 years ago by 53k • written 2.5 years ago by • 0
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How to use txtimport and do differential expression
NewWave
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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