Biostar OSCA

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3

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3

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1.6k

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OSCA batchelor cell cycle regression

updated 2.6 years ago by Aaron Lun ★ 28k • written 2.6 years ago by ATpoint ★ 2.5k

3

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2

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605

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scater OSCA

9 months ago Guandong Shang ▴ 40

2

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1

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325

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SingleCell R OSCA

updated 11 months ago by jeroen.gilis ▴ 90 • written 11 months ago by BioInfoBeginnerrr • 0

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2

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295

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Pseudotime testPseudotime TSCAN SingleCell OSCA

6 months ago Guandong Shang ▴ 40

4 results • Page 1 of 1

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Comment: how can I do gene differential analysis on data after vst by linouhao ▴ 20

Thanks a lot. so do you know when professor Gordon Smyth says 'Differential expression analysis of vst values can be performed by limma-t…

Comment: Help with Error in DiffBind by Rory Stark ★ 4.7k

Apologies. The first line should be result <- dba(sampleSheet=samples) I've gone back and edited previous replies to reflect this.

Answer: *** caught segfault *** , cause 'memory not mapped' by James W. MacDonald 62k

You are unfortunately running out of RAM. As you note, you could possibly use `frma`, after generating frozen vectors using the `frmaTools`…

Comment: Help with Error in DiffBind by Chris • 0

Thanks Rory! result <- dba(samples) Error in if ((length(callers) == 1) & (callers[1] == "counts")) { : argument is of len…

Answer: Help with Error in DiffBind by Rory Stark ★ 4.7k

In your case, with only two replicates in each sample group, you can not perform a default analysis using only `dba.analyze()`. I suggest t…

Votes

Analyzing RNA-seq data by WGCNA

A: Analyzing RNA-seq data by WGCNA

Comment: Help with Error in DiffBind

WGCNA: Module preservation vs consensus analysis

Awards • All

Supporter to linouhao ▴ 20