Bioconductor OSCA

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Pseudotime testPseudotime TSCAN SingleCell OSCA

14 months ago Guandong Shang ▴ 40

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scater OSCA

17 months ago Guandong Shang ▴ 40

2

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594

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SingleCell R OSCA

updated 19 months ago by jeroen.gilis ▴ 90 • written 19 months ago by BioInfoBeginnerrr • 0

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OSCA batchelor cell cycle regression

updated 3.3 years ago by Aaron Lun ★ 28k • written 3.3 years ago by ATpoint ★ 3.6k

4 results • Page 1 of 1

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Replies

Answer: Obtaining rsIDs with ENSG and variant ID information by Robert Castelo ★ 3.0k

You should first and foremost find out what was the human reference genome version from which your dataset was derived. Assuming this was G…

Comment: DESeq2 - groups with biological replicates from the same patient by James W. MacDonald 64k

If by clustering you mean there might be a within-subject correlation, then yes it's a possibility. But you cannot control for that using a…

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Mike Smith ★ 6.2k

If we hover over the tiny little red icon next to the Linux build report, we can see that the source package isn't being distributed becaus…

Comment: ClusterProfiler - enrichKEGG on specific pathways by EvaLan • 0

Hey bekah, I wonder if you have found the solution to solve this issue? Best wishes, EvaLan

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Gordon Smyth 48k

That's a good question. On the DMRcate landing page, one can see that the "Source package" file is missing, meaning that installation in Un…

Votes

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: limma::voom vs edgeR::voomLmFit - when to use?

Answer: trying to add SingleR label to Seurat Object fails

Comment: DESeq2 - groups with biological replicates from the same patient

Answer: EdgeR: Exact test and glmQLFTest produce very different results

Awards • All

Scholar to James W. MacDonald 64k

Scholar to Assa Yeroslaviz ★ 1.5k