Bioconductor OSCA

Showing : OSCA • reset

votes

replies

863

views

BIOCON OSCA Bioconductor

17 months ago zr • 0

votes

replies

1.9k

views

Pseudotime testPseudotime TSCAN SingleCell OSCA

3.4 years ago Guandong Shang ▴ 40

votes

replies

3.2k

views

scater OSCA

3.6 years ago Guandong Shang ▴ 40

votes

1.3k

views

SingleCell R OSCA

updated 3.8 years ago by jeroen.gilis ▴ 100 • written 3.8 years ago by BioInfoBeginnerrr • 0

votes

replies

4.0k

views

OSCA batchelor cell cycle regression

updated 5.5 years ago by Aaron Lun ★ 29k • written 5.5 years ago by ATpoint ★ 5.0k

5 results • Page 1 of 1

Recent ...

Replies

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

Votes

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Subsetting data verses contrasts [DESeq2]?

Awards • All

Popular Question to Peter Hickey ▴ 760