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Comment: Rsubread - Error on buildindex - big ref sequence
by
bryan.penning
• 0
That is most unfortunate. I truly believe subread would be a superior aligner for complex plant genomes, especially in terms of accuracy. T…
Answer: Matching patterns in an AAStringset
by
Aidan
▴ 60
This question is tagged `Biostrings`, but `str_detect` isn't part of the `Biostrings` package. If you're trying to use the tidyverse `str_d…
Comment: Can we get beta values with DMRcate package
by
James W. MacDonald
67k
If `getCollapsedBetas` isn't exported, you need to update. It's been exported since DMRcate_3.1.9 and the release version is 3.2.0 You sai…
Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
by
ATpoint
★ 4.6k
Unknown reason means that from the results you show one cannot easily infer why exactly the IF removed this gene in one but not in the othe…
Comment: Can we get beta values with DMRcate package
by
Melisa Tecik
• 0
Thank you so much for the detailed explanation. I have loaded the package and already used dmrcate and extractRanges functions. I had no …
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Comment: What type of counts data to import for performing Isoform analysis in edgeR
A: Relations used in GO.db GOBPANCESTOR
Relations used in GO.db GOBPANCESTOR
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
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