Bioconductor PCATools

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edgeR PCAtools

updated 28 days ago by Gordon Smyth 50k • written 4 weeks ago by Fabian • 0

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8

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DESeq2 RSTUDIO PCAtools

updated 3 days ago by swbarnes2 ★ 1.3k • written 5 days ago by Aaliya • 0

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2

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DESeq2 PCAtools

updated 2 days ago by Michael Love 41k • written 3 days ago by Aaliya • 0

3 results • Page 1 of 1

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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

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