updated 26 days ago by
Gordon Smyth
50k
•
written 28 days ago by
Fabian
•
0
3
votes
5
replies
340
views
0
votes
8
replies
239
views
0
votes
2
replies
68
views
updated 1 minute ago by
Michael Love
41k
•
written 1 day ago by
Aaliya
•
0
Recent ...
Replies
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴
10
Hi Michael,
Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★
4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴
10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★
4.0k
I do not know this decontamination tool you use but generally:
If these counts are basically "corrected" raw counts in the sense that they'…
Votes
Awards
• All
Locations
• All
Portugal, just now
France, 3 minutes ago
United Kingdom, 5 minutes ago
United States, 11 minutes ago
United States, 13 minutes ago
Portugal, just now
France, 3 minutes ago
United Kingdom, 5 minutes ago
United States, 11 minutes ago
United States, 13 minutes ago
Traffic: 1045 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6