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Phylogenetics
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does anyone how to create rarefaction curves from a phyloseq object?
phyloseq
Phylogenetics
updated 13 months ago by
RMiller
▴ 10 • written 13 months ago by
kevin
• 0
1
vote
2
replies
2.3k
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Bootstrap value using ape package and including it in phylogenetic tree
Phylogenetics
2.8 years ago • updated 2.7 years ago
Lanjamarina
• 0
0
votes
6
replies
1.4k
views
convert default phylip to sequential phylip
phyloseq
Phylogenetics
updated 12 months ago by
yrkkhdesiserials
• 0 • written 2.7 years ago by
memy
• 0
0
votes
0
replies
1.1k
views
Co-occurrence Network Analysis between Algae and Bacteria
igraph
networkanalysis
Phylogenetics
phyloseq
3.3 years ago
Chantel
• 0
0
votes
0
replies
903
views
Job:
Postdoctoral Fellow in Sars-CoV-2 genomics and transcriptomics @ Paul-Ehrlich-Institute, Germany
rna-seq
phylogenetics
protein modelling
single-cell sequencing
Job
3.8 years ago
liam.childs
• 0
0
votes
0
replies
843
views
How to assign custom colour codes for Multiple sequence alignment (MSA)?
Phylogenetics
genomes
R
MultipleSequenceAlignment
Bioconductor
2.7 years ago
K.
• 0
6 results • Page
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Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 with no issues at all. If you're having trouble with Bioc installa…
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function?
by
Henrik Bengtsson
★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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