Bioconductor Phytozome

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Zea_mays Attributes biomaRt Phytozome

updated 3.7 years ago by SK • 0 • written 3.8 years ago by s.k.tepler ▴ 10

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biomaRt getBM Phytozome Chlamydomonas

updated 5.6 years ago by Mike Smith ★ 6.6k • written 5.6 years ago by ytlin610 ▴ 10

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Biomart phytozome

5.7 years ago l.willianpacheco • 0

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biomaRT Rcurl phytozome

updated 6.5 years ago by Mike Smith ★ 6.6k • written 6.5 years ago by s.nielsen ▴ 20

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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