Showing : biomaRT • reset
2
votes
4
replies
313
views
Converting Probe IDs to HGNC symbols
Annotation biomaRt GEOquery
written 6 weeks ago by ▴ 10
0
votes
5
replies
3.1k
views
Ensembl site unresponsive via biomaRt
biomaRt
written 10 months ago by • 0
1
vote
2
replies
487
views
News: Upcoming Ensembl API and data access changes - new blog post available
ensembl mart biomaRt ensembldb
written 10 weeks ago by ▴ 10
0
votes
1
reply
433
views
Extract snp information from genomic regions with biomaRt -> "oaries_snp"
biomaRt
updated 12 weeks ago by ★ 4.0k • written 5 months ago by • 0
5
votes
3
replies
709
views
Issues with downloading biomaRt - SeqInfo and S4 Vectors
S4Vectors biomaRt Seqinfo
updated 3 months ago by 68k • written 3 months ago by ▴ 10
0
votes
1
reply
439
views
News: Ensembl 115 has been released!
ensembl ensembldb biomaRt
written 5 months ago by ▴ 10
1
vote
3
replies
1.6k
views
News: Ensembl 114 / Ensembl Genomes 61 has been released!
biomaRt ensembldb
written 9 months ago by ▴ 30
1
vote
1
reply
736
views
Biomart server error
biomaRt BioMartGOGeneSets
updated 8 months ago by 68k • written 8 months ago by • 0
0
votes
3
replies
967
views
getBM from biomaRt inconsistencies found with .gtf files across multiple species
.gtf biomaRt Ensembl
updated 10 months ago by ★ 6.6k • written 10 months ago by ▴ 20
3
votes
5
replies
2.5k
views
Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
limma edgeR biomaRt
updated 13 months ago by 68k • written 13 months ago by ▴ 10
0
votes
2
replies
2.2k
views
Error using useMart or useEnsembl
biomaRt
updated 13 months ago by 68k • written 13 months ago by • 0
0
votes
4
replies
2.4k
views
Biomart and ensembl not working?
ensembldb biomaRt
updated 13 months ago by 68k • written 13 months ago by • 0
3
votes
9
replies
2.7k
views
Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) returning drastically different numbers of transcripts
AnnotationDbi EnsDb.Mmusculus.v79 biomaRt org.Mm.eg.db
updated 12 months ago by • 0 • written 13 months ago by • 0
4
votes
9
replies
3.3k
views
biomaRt rnorvegicus_gene_ensembl not available anymore
Rattus_norvegicus biomaRt
updated 14 months ago by 68k • written 15 months ago by ▴ 20
0
votes
0
replies
1.2k
views
News: Ensembl 113 has been released
ensembl ensembldb mart biomaRt
16 months ago Ensembl_Jorge ▴ 10
0
votes
1
reply
963
views
BiomaRt - improved access to Ensembl ?
biomaRt
updated 16 months ago by ★ 6.6k • written 16 months ago by • 0
2
votes
2
replies
1.9k
views
Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
16 months ago 2044291597 • 0
1
vote
3
replies
2.1k
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 17 months ago by 68k • written 2.0 years ago by ▴ 10
1
vote
4
replies
2.1k
views
BiomaRt Possible Ensembl SSL connectivity problems detected.
PureCN biomaRt
updated 15 months ago by • 0 • written 17 months ago by • 0
1
vote
4
replies
1.7k
views
How to Query Only SNPs from the biomaRt Variation Database
biomaRt
18 months ago kschecht • 0
2
votes
8
replies
4.2k
views
biomaRt getLDS error
biomaRt
18 months ago mark.dunning ▴ 20
1
vote
2
replies
1.6k
views
Issues with retrieving mouse SNP dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
20 months ago • updated 19 months ago Svitlana ▴ 10
0
votes
0
replies
691
views
BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
biomaRt
20 months ago Reese • 0
0
votes
2
replies
1.1k
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db biomaRt
21 months ago landenshanie ▴ 40
0
votes
0
replies
644
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets allele_freq biomaRt getBM
21 months ago Abiologist • 0
1
vote
0
replies
1.2k
views
News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
21 months ago Aleena_Ensembl ▴ 30
1
vote
3
replies
1.0k
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 22 months ago by 68k • written 22 months ago by ▴ 30
2
votes
2
replies
1.9k
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 22 months ago by 68k • written 22 months ago by • 0
0
votes
1
reply
981
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 22 months ago by 68k • written 22 months ago by • 0
0
votes
1
reply
2.0k
views
error in mapIds function
mapIds biomaRt
updated 23 months ago by 700 • written 24 months ago by • 0
0
votes
2
replies
1.6k
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
2.0 years ago eefernan5 • 0
3
votes
3
replies
17k
views
How to find rsID with biomaRt in R
biomaRt
updated 2.0 years ago by 68k • written 5.0 years ago by ▴ 10
0
votes
1
reply
780
views
biomaRt issue
biomaRt
updated 2.0 years ago by ★ 6.6k • written 2.0 years ago by • 0
1
vote
5
replies
2.4k
views
BiomaRt download data error
biomaRt
updated 2.0 years ago by ★ 6.6k • written 2.0 years ago by • 0
6
votes
9
replies
4.5k
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 2.0 years ago by • 0 • written 2.0 years ago by • 0
1
vote
1
reply
2.3k
views
Error with biomaRt
biomaRt
updated 2.1 years ago by ★ 6.6k • written 2.1 years ago by • 0
4
votes
2
replies
1.5k
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 2.1 years ago by ★ 4.1k • written 2.1 years ago by • 0
2
votes
2
replies
1.7k
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
2.1 years ago bd2000 ▴ 30
1
vote
0
replies
861
views
News: Ensembl 111 has been released
Ensembl biomaRt
2.1 years ago Benjamin ▴ 30
0
votes
2
replies
1.4k
views
Problem with loading ensembl version 105.
biomaRt
2.1 years ago RC • 0
0
votes
1
reply
2.3k
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
0
votes
3
replies
2.2k
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 2.2 years ago by ★ 3.4k • written 2.2 years ago by ▴ 30
4
votes
12
replies
2.8k
views
Ensembl down???
biomaRt
2.2 years ago bas_work ▴ 30
3
votes
2
replies
1.3k
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
2.2 years ago henrydionne ▴ 10
1
vote
2
replies
2.9k
views
How to find stop codons for a list of genes
stopcodon biomaRt
2.2 years ago Marek Gierlinski ▴ 30
0
votes
10
replies
2.1k
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
2.2 years ago • updated 23 months ago ScafioRuo • 0
12
votes
10
replies
17k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 23 months ago by • 0 • written 2.3 years ago by ▴ 20
0
votes
3
replies
1.3k
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 2.3 years ago by 53k • written 2.3 years ago by • 0
1
vote
4
replies
1.6k
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
2.4 years ago andrew.b.kleist ▴ 10
7
votes
6
replies
9.8k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 2.3 years ago by 700 • written 3.5 years ago by ▴ 20
1,084 results • Page 1 of 22
Recent ...
Replies
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k
I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…
Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k
Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0
Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…
Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0
Hello, I was also wondering about the same issue. Did you figure it out?
Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0
FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…
Votes
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
Awards • All
Scholar to Gordon Smyth 53k
Popular Question to Peter Hickey ▴ 760
Popular Question to Sean Davis 21k
Popular Question to James W. MacDonald 68k
Popular Question to shepherl 4.3k
Locations • All
Slovakia, 3 minutes ago
Barcelona, Spain, 29 minutes ago
United States, 49 minutes ago
WEHI, Melbourne, Australia, 55 minutes ago
Germany, 1 hour ago
Traffic: 818 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6