Showing : biomaRT • reset
2
votes
4
replies
335
views
Converting Probe IDs to HGNC symbols
Annotation biomaRt GEOquery
written 7 weeks ago by ▴ 10
0
votes
5
replies
3.1k
views
Ensembl site unresponsive via biomaRt
biomaRt
written 11 months ago by • 0
1
vote
2
replies
507
views
News: Upcoming Ensembl API and data access changes - new blog post available
ensembl mart biomaRt ensembldb
written 11 weeks ago by ▴ 10
0
votes
1
reply
449
views
Extract snp information from genomic regions with biomaRt -> "oaries_snp"
biomaRt
updated 3 months ago by ★ 4.0k • written 5 months ago by • 0
5
votes
3
replies
753
views
Issues with downloading biomaRt - SeqInfo and S4 Vectors
S4Vectors biomaRt Seqinfo
updated 3 months ago by 68k • written 3 months ago by ▴ 10
0
votes
1
reply
517
views
News: Ensembl 115 has been released!
ensembl ensembldb biomaRt
written 5 months ago by ▴ 10
1
vote
3
replies
1.6k
views
News: Ensembl 114 / Ensembl Genomes 61 has been released!
biomaRt ensembldb
written 9 months ago by ▴ 30
1
vote
1
reply
739
views
Biomart server error
biomaRt BioMartGOGeneSets
updated 9 months ago by 68k • written 9 months ago by • 0
0
votes
3
replies
974
views
getBM from biomaRt inconsistencies found with .gtf files across multiple species
.gtf biomaRt Ensembl
updated 11 months ago by ★ 6.6k • written 11 months ago by ▴ 20
3
votes
5
replies
2.5k
views
Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
limma edgeR biomaRt
updated 13 months ago by 68k • written 13 months ago by ▴ 10
0
votes
2
replies
2.2k
views
Error using useMart or useEnsembl
biomaRt
updated 13 months ago by 68k • written 13 months ago by • 0
0
votes
4
replies
2.5k
views
Biomart and ensembl not working?
ensembldb biomaRt
updated 13 months ago by 68k • written 13 months ago by • 0
3
votes
9
replies
2.8k
views
Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) returning drastically different numbers of transcripts
AnnotationDbi EnsDb.Mmusculus.v79 biomaRt org.Mm.eg.db
updated 12 months ago by • 0 • written 13 months ago by • 0
4
votes
9
replies
3.3k
views
biomaRt rnorvegicus_gene_ensembl not available anymore
Rattus_norvegicus biomaRt
updated 14 months ago by 68k • written 16 months ago by ▴ 20
0
votes
0
replies
1.2k
views
News: Ensembl 113 has been released
ensembl ensembldb mart biomaRt
16 months ago Ensembl_Jorge ▴ 10
0
votes
1
reply
979
views
BiomaRt - improved access to Ensembl ?
biomaRt
updated 17 months ago by ★ 6.6k • written 17 months ago by • 0
2
votes
2
replies
1.9k
views
Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
17 months ago 2044291597 • 0
1
vote
3
replies
2.1k
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 17 months ago by 68k • written 2.0 years ago by ▴ 10
1
vote
4
replies
2.3k
views
BiomaRt Possible Ensembl SSL connectivity problems detected.
PureCN biomaRt
updated 15 months ago by • 0 • written 18 months ago by • 0
1
vote
4
replies
1.8k
views
How to Query Only SNPs from the biomaRt Variation Database
biomaRt
18 months ago kschecht • 0
2
votes
8
replies
4.3k
views
biomaRt getLDS error
biomaRt
18 months ago mark.dunning ▴ 20
1
vote
2
replies
1.6k
views
Issues with retrieving mouse SNP dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
20 months ago Svitlana ▴ 10
0
votes
0
replies
702
views
BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
biomaRt
20 months ago Reese • 0
0
votes
2
replies
1.2k
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db biomaRt
21 months ago landenshanie ▴ 40
0
votes
0
replies
645
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets allele_freq biomaRt getBM
21 months ago Abiologist • 0
1
vote
0
replies
1.2k
views
News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
21 months ago Aleena_Ensembl ▴ 30
1
vote
3
replies
1.0k
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 22 months ago by 68k • written 22 months ago by ▴ 30
2
votes
2
replies
2.0k
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 22 months ago by 68k • written 22 months ago by • 0
0
votes
1
reply
992
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 23 months ago by 68k • written 23 months ago by • 0
0
votes
1
reply
2.1k
views
error in mapIds function
mapIds biomaRt
updated 24 months ago by 700 • written 2.0 years ago by • 0
0
votes
2
replies
1.6k
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
2.0 years ago eefernan5 • 0
3
votes
3
replies
17k
views
How to find rsID with biomaRt in R
biomaRt
updated 2.0 years ago by 68k • written 5.0 years ago by ▴ 10
0
votes
1
reply
790
views
biomaRt issue
biomaRt
updated 2.0 years ago by ★ 6.6k • written 2.0 years ago by • 0
1
vote
5
replies
2.4k
views
BiomaRt download data error
biomaRt
updated 2.0 years ago by ★ 6.6k • written 2.0 years ago by • 0
6
votes
9
replies
4.6k
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 2.1 years ago by • 0 • written 2.1 years ago by • 0
1
vote
1
reply
2.4k
views
Error with biomaRt
biomaRt
updated 2.1 years ago by ★ 6.6k • written 2.1 years ago by • 0
4
votes
2
replies
1.5k
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 2.1 years ago by ★ 4.1k • written 2.1 years ago by • 0
2
votes
2
replies
1.7k
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
2.1 years ago bd2000 ▴ 30
1
vote
0
replies
868
views
News: Ensembl 111 has been released
Ensembl biomaRt
2.1 years ago Benjamin ▴ 30
0
votes
2
replies
1.5k
views
Problem with loading ensembl version 105.
biomaRt
2.2 years ago RC • 0
0
votes
1
reply
2.3k
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
0
votes
3
replies
2.3k
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 2.2 years ago by ★ 3.4k • written 2.2 years ago by ▴ 30
4
votes
12
replies
2.8k
views
Ensembl down???
biomaRt
2.2 years ago bas_work ▴ 30
3
votes
2
replies
1.4k
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
2.3 years ago • updated 2.2 years ago henrydionne ▴ 10
1
vote
2
replies
3.0k
views
How to find stop codons for a list of genes
stopcodon biomaRt
2.3 years ago Marek Gierlinski ▴ 30
0
votes
10
replies
2.1k
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
2.3 years ago • updated 24 months ago ScafioRuo • 0
12
votes
10
replies
17k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 23 months ago by • 0 • written 2.3 years ago by ▴ 20
0
votes
3
replies
1.4k
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 2.3 years ago by 53k • written 2.3 years ago by • 0
1
vote
4
replies
1.6k
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
2.4 years ago andrew.b.kleist ▴ 10
7
votes
6
replies
9.9k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 2.4 years ago by 700 • written 3.5 years ago by ▴ 20
1,084 results • Page 1 of 22
Recent ...
Replies
Comment: Question on processing compound protein groups in limpa by JKim • 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa by Gordon Smyth 53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input by Gordon Smyth 53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2 by a2a2hset32aa • 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts by a2a2hset32aa • 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
Votes
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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Scholar to Gordon Smyth 53k
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