Biostar Pipeline

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scRNAseq Pipeline Seurat SingleCellExperiment

2.2 years ago albadrs.93 ▴ 10

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illumina human ht-12 v4 limma pipeline

5.4 years ago alakatos ▴ 110

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docker annotation pipeline

5.7 years ago Elena Grassi ▴ 10

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Comment: Trying to follow a gene set analyisis in R by Michael Love 35k

It looks like you only have a single sample.

Comment: Trying to follow a gene set analyisis in R by leonardorosas2001 • 0

I get the following > design = model.matrix(~ es$condition) > design (Intercept) es$conditiondex4 attr(,"assign") [1] 0 1 attr(,"co…

Comment: How to use subjunc for differential splicing analysis? by Yang Liao ▴ 280

Annotation to the *subjunc* aligner helps the aligner to better map the reads. The aligner generates BAM files, which contains mapped reads…

Answer: universalmotif, question about enrich_motifs function and number of hits returne by btremblay ▴ 30

Hi, After doing some digging I've isolated the issue to being related to the threshold calculation which you request with the `threshold…

Answer: DE analysis model matrix for paired samples by Michael Love 35k

Agree with swbarnes2. It just seems like the condition effect is very small. Also I'd double check the metadata. Sometimes samples are swap…

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A: DNAcopy

Answer: catchKallisto results are not counts

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