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Useful information about Ensembl release 67 mart databases
miRNA
GO
Caenorhabditis elegans
Sus scrofa
zebrafish
PolyPhen
SIFT
miRNA
GO
Sus scrofa
12.0 years ago • updated 11.9 years ago
Thomas Maurel
▴ 800
0
votes
0
replies
1.5k
views
Useful information about Ensembl release 71 mart databases
zebrafish
PolyPhen
SIFT
affy
genomes
zebrafish
PolyPhen
SIFT
affy
genomes
11.1 years ago
Thomas Maurel
▴ 800
0
votes
0
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1.1k
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Useful information about Ensembl release 72 mart databases
PolyPhen
PolyPhen
10.9 years ago
Thomas Maurel
▴ 800
0
votes
4
replies
1.3k
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zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
Annotation
PolyPhen
SIFT
Annotation
PolyPhen
SIFT
updated 10.6 years ago by
Valerie Obenchain
★ 6.8k • written 10.6 years ago by
Robert Castelo
★ 3.3k
0
votes
0
replies
1.2k
views
zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
VariantAnnotation
Annotation
PolyPhen
SIFT
annotate
VariantAnnotation
ensemblVEP
Annotation
10.4 years ago
Valerie Obenchain
★ 6.8k
0
votes
2
replies
2.2k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Transcription
HapMap
PolyPhen
SIFT
convert
genomes
ensemblVEP
Transcription
HapMap
SIFT
updated 10.3 years ago by
Valerie Obenchain
★ 6.8k • written 10.3 years ago by
Thomas Sandmann
▴ 30
0
votes
1
reply
461
views
Help with installing Biocmanager
pd.rabgene.1.0.st
PolyPhen
updated 2.3 years ago by
ATpoint
★ 4.1k • written 2.3 years ago by
cyb.95521
• 0
7 results • Page
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Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Comment: Store output of matchPWM()
by
James W. MacDonald
65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
Comment: DEseq2 coefficient
by
JKim
• 0
Hi Dr. Love, I'm sorry to ask another question to my old post. If the design isn't balanced, the interpretation of coefficients will be…
Votes
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
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