Bioconductor Quality

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RNA-seq PCA control DESeq2 Quality

2.8 years ago • updated 2.7 years ago 9906201a ▴ 20

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folder quality QualityControl AffyExpress

4.0 years ago bastien_chassagnol • 0

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microarray quality

updated 5.9 years ago by Wolfgang Huber ★ 13k • written 5.9 years ago by RV ▴ 10

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base quality quality mean base quality

updated 8.2 years ago by Mike Smith ★ 6.6k • written 8.2 years ago by christiangriffioen • 0

4 results • Page 1 of 1

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Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

This is useful information.

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

Answer: EuroBioC2023 abstract submission closing soon! by excess.gecko.shso • 0

Don't miss out! EuroBioC2023 abstract submissions are nearing the deadline. Sharpen your scientific [Wordle Game][1] skills and submit your…

Votes

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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Teacher to dsull ▴ 40