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Quality
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5
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First principal component variance stabilised RNA-seq data correlates with total read counts per sample / library concentration
RNA-seq
PCA
control
DESeq2
Quality
3.0 years ago • updated 2.8 years ago
9906201a
▴ 20
0
votes
0
replies
775
views
AffyExpress choose relative path folder
folder
quality
QualityControl
AffyExpress
4.2 years ago
bastien_chassagnol
• 0
0
votes
1
reply
1.0k
views
Array quality metrics for large sample size
microarray
quality
updated 6.1 years ago by
Wolfgang Huber
★ 13k • written 6.1 years ago by
RV
▴ 10
0
votes
3
replies
2.6k
views
what does "mean base quality" mean?
base quality
quality
mean base quality
updated 8.4 years ago by
Mike Smith
★ 6.6k • written 8.4 years ago by
christiangriffioen
• 0
4 results • Page
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Answer: cameraPR() non directional test
by
Gordon Smyth
52k
Yes, you can still do non-directional tests using cameraPR(), but it's not quite as easy as it was using the original camera() function as …
Answer: WGCNA with paired samples
by
Ivo
• 0
You can use batch correction on the person ID and then continue WGCNA as usual using the corrected matrix. You can use e.g. sva::ComBat or …
Answer: Plot title for PCA in DESeq2
by
ATpoint
★ 4.7k
The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.
Comment: DESeq2 It is correct to use interaction term for patient variability?
by
Bradley
• 0
I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…
Comment: Differential variance analysis - can i use deseq2
by
Michael Love
43k
VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…
Votes
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: normalizatino of dna methylation EPIC data
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
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