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QualityControl
•
reset
0
votes
0
replies
75
views
getsex function error.
QualityControl
methylationArrayAnalysis
3 months ago
zusman
• 0
0
votes
1
reply
321
views
Error when running qAlign from QuasR package for sequence alignment & QC.
QualityControl
Alignment
QuasR
updated 15 months ago by
Michael Stadler
▴ 350 • written 15 months ago by
h.kozlowski
• 0
0
votes
0
replies
196
views
AffyExpress choose relative path folder
folder
quality
QualityControl
AffyExpress
17 months ago
bastien_chassagnol
• 0
0
votes
2
replies
929
views
Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc
qualitycontrol
arrayqualitymetrics
mouse gene st 2.0
affymetrix
updated 4.8 years ago by
James W. MacDonald
59k • written 4.8 years ago by
n.lu
• 0
3
votes
2
replies
592
views
Q score filter to each base in QualityScaledDNAStringSet
qualitycontrol
updated 5.2 years ago by
Mike Smith
★ 5.5k • written 5.2 years ago by
XIA.PAN
▴ 20
0
votes
0
replies
656
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
5.3 years ago
chelsey.ju
• 0
2
votes
0
replies
716
views
Quality Assessment of one color Agilent arrays?
limma
one colour
agilent microarrays
qualitycontrol
arrayqualitymetrics
5.6 years ago
Bouzid.a
▴ 20
1
vote
14
replies
2.5k
views
GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and workflow
GWASTools
qualitycontrol
HumanOmni5-4BeadChip
GenomeStudio
illumina
updated 6.0 years ago by
Stephanie M. Gogarten
▴ 820 • written 6.0 years ago by
Lna
• 0
2
votes
2
replies
1.0k
views
Manually compute NUSE score
NUSE
qualitycontrol
microarray
updated 6.4 years ago by
Diego Diez
▴ 760 • written 6.4 years ago by
jacorvar
▴ 40
4
votes
2
replies
1.7k
views
Quality control on RNA-Seq (level 3) data from TCGA
rna-seq
GC-Content
qualitycontrol
updated 6.5 years ago by
Matthew McCormack
▴ 180 • written 6.5 years ago by
NS
▴ 60
1
vote
2
replies
1.3k
views
array quality control, affy probes, contracts setting in limma, result interpretation and weights
limma
affy
probe
qualitycontrol
design and contrast matrix
updated 7.4 years ago by
Gordon Smyth
45k • written 7.4 years ago by
alakatos
▴ 120
0
votes
1
reply
774
views
read.maimages problem under sun ?
Microarray
OneChannel
TwoChannel
DifferentialExpression
Preprocessing
QualityControl
affy
15.0 years ago
Amin Moghaddasi
▴ 130
12 results • Page
1 of 1
Recent ...
Replies
Comment: performing the differential binding in ChIP-seq
by
ATpoint
★ 1.2k
Cross-posted https://www.biostars.org/p/9524012/#9524012
Comment: Transcript-level differential expression using DESeq2
by
Ekta
• 0
Yes, i tried that. I used salmon bootstraps also for the same RNAseq data to run Swish and performed the Differential transcript expressio…
Comment: how to make a group to apply the data to CAMERA
by
Akira
• 0
Thank you so much for your quick answer!! I will look into them! I appreciate your kind support.
Comment: performing the differential binding in ChIP-seq
by
Bogdan
▴ 640
I am asking the question because we have two sets of ChIP-seq data for a histone mark (lets' say H3K4me1) that were generated with : <> an…
Comment: performing the differential binding in ChIP-seq
by
Bogdan
▴ 640
Thank you. Yes, DiffBind might be a good choice shall we have replicates per sample. Another choice is MA-norm2. Any other well-tested sug…
Votes
Answer: how to make a group to apply the data to CAMERA
Answer: how to make a group to apply the data to CAMERA
Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
Answer: How to best visualize multi-level transcriptomics experiment data?
A: Interpreting results of sample-to-sample PCA/clustering and changing assignment
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Gordon Smyth
45k
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andrebolerbarros
▴ 10
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James W. MacDonald
59k
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Guido Hooiveld
★ 3.2k
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Kevin Blighe
3.5k
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