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QualityControl
•
reset
0
votes
0
replies
341
views
getsex function error.
QualityControl
methylationArrayAnalysis
16 months ago
zusman
• 0
0
votes
1
reply
644
views
Error when running qAlign from QuasR package for sequence alignment & QC.
QualityControl
Alignment
QuasR
updated 2.3 years ago by
Michael Stadler
▴ 350 • written 2.3 years ago by
h.kozlowski
• 0
0
votes
0
replies
407
views
AffyExpress choose relative path folder
folder
quality
QualityControl
AffyExpress
2.5 years ago
bastien_chassagnol
• 0
0
votes
2
replies
1.1k
views
Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc
qualitycontrol
arrayqualitymetrics
mouse gene st 2.0
affymetrix
updated 5.8 years ago by
James W. MacDonald
63k • written 5.8 years ago by
n.lu
• 0
3
votes
2
replies
731
views
Q score filter to each base in QualityScaledDNAStringSet
qualitycontrol
updated 6.2 years ago by
Mike Smith
★ 6.0k • written 6.2 years ago by
XIA.PAN
▴ 20
0
votes
0
replies
806
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
6.3 years ago
chelsey.ju
• 0
2
votes
0
replies
898
views
Quality Assessment of one color Agilent arrays?
limma
one colour
agilent microarrays
qualitycontrol
arrayqualitymetrics
6.6 years ago
Bouzid.a
▴ 20
1
vote
14
replies
3.1k
views
GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and workflow
GWASTools
qualitycontrol
HumanOmni5-4BeadChip
GenomeStudio
illumina
updated 7.1 years ago by
Stephanie M. Gogarten
▴ 840 • written 7.1 years ago by
Lna
• 0
2
votes
2
replies
1.2k
views
Manually compute NUSE score
NUSE
qualitycontrol
microarray
updated 7.4 years ago by
Diego Diez
▴ 760 • written 7.4 years ago by
jacorvar
▴ 40
4
votes
2
replies
2.0k
views
Quality control on RNA-Seq (level 3) data from TCGA
rna-seq
GC-Content
qualitycontrol
updated 7.6 years ago by
Matthew McCormack
▴ 180 • written 7.6 years ago by
NS
▴ 60
1
vote
2
replies
1.5k
views
array quality control, affy probes, contracts setting in limma, result interpretation and weights
limma
affy
probe
qualitycontrol
design and contrast matrix
updated 8.4 years ago by
Gordon Smyth
47k • written 8.4 years ago by
alakatos
▴ 120
0
votes
1
reply
948
views
read.maimages problem under sun ?
Microarray
OneChannel
TwoChannel
DifferentialExpression
Preprocessing
QualityControl
affy
16.1 years ago
Amin Moghaddasi
▴ 130
12 results • Page
1 of 1
Recent ...
Replies
Answer: DESeq2 + analysis question for design with uneven time point design
by
Michael Love
40k
I'd recommend reaching out to a local statistician or someone familiar with linear models in R. Unfortunately, I have to reserve my time on…
Answer: Genes with highest differential expression have very low read counts for most ge
by
Michael Love
40k
Have you use `lfcShrink`? Or `results` with `lfcThreshold`? Either of these are recommended for prioritizing DE genes.
Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat
by
Gordon Smyth
47k
Yes, it is obvious that you can use expression measurements as covariates when predicting subject phenotypes. We all do that on occasion. …
Comment: Extract Limma Adjusted Values for Plotting
by
ATpoint
★ 2.9k
Yes, with normalized counts on log2 scale.
Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat
by
Anna
▴ 20
A no I never referred to transcriptomic data when I was talking about "standard procedure" I was referring to the way we analyze longitudin…
Votes
A: Ranges from a fasta file
Answer: NA transcript values in my Txdb
Comment: Interpret plot from DiffBind
Answer: Use with_go along with other filters in getBM function
Answer: Use with_go along with other filters in getBM function
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to
Mike Smith
★ 6.0k
Popular Question
to
Martin Morgan
25k
Teacher
to
deeenes
▴ 30
Popular Question
to
Hervé Pagès
16k
Popular Question
to
Gordon Smyth
47k
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