Bioconductor QualityControl

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QualityControl methylationArrayAnalysis

3.2 years ago zusman • 0

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1.4k

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QualityControl Alignment QuasR

updated 4.2 years ago by Michael Stadler ▴ 350 • written 4.2 years ago by h.kozlowski • 0

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797

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folder quality QualityControl AffyExpress

4.4 years ago bastien_chassagnol • 0

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qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix

updated 7.7 years ago by James W. MacDonald 68k • written 7.7 years ago by n.lu • 0

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qualitycontrol

updated 8.1 years ago by Mike Smith ★ 6.6k • written 8.1 years ago by XIA.PAN ▴ 20

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1.2k

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shinymethyl minfi epic microarray methylationepic qualitycontrol

8.2 years ago chelsey.ju • 0

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limma one colour agilent microarrays qualitycontrol arrayqualitymetrics

8.5 years ago Bouzid.a ▴ 20

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GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina

updated 9.0 years ago by Stephanie M. Gogarten ▴ 890 • written 9.0 years ago by Lna • 0

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1.7k

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NUSE qualitycontrol microarray

updated 9.3 years ago by Diego Diez ▴ 760 • written 9.3 years ago by jacorvar ▴ 40

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2.8k

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rna-seq GC-Content qualitycontrol

updated 9.5 years ago by Matthew McCormack ▴ 180 • written 9.5 years ago by NS ▴ 60

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2.0k

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limma affy probe qualitycontrol design and contrast matrix

updated 10.3 years ago by Gordon Smyth 52k • written 10.3 years ago by alakatos ▴ 130

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1.5k

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Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy

17.9 years ago Amin Moghaddasi ▴ 130

12 results • Page 1 of 1

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Comment: FlowSOM library requires igraph but igraph does not install by Szabolcs • 0

The R/igraph Installation FAQ covers most issues: https://r.igraph.org/articles/installation-troubleshooting.html

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20

Thank you very much for the vis suggestion!

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20

Thank you very much - I appreciate the mathematical explanation and link to Dr. Phipson's thesis!

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20

Thank you very much - this is very clear!

Answer: How do I set up my DESeq analysis when I know a few vehicle control samples prov by Michael Love 43k

I think it will capture it automatically. E.g. if you use the method that focuses on genes lowly or not affected by the treatment, then the…

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Comment: edgeR::cpm() results in negative values from raw counts of 0

Answer: edgeR::cpm() results in negative values from raw counts of 0

edgeR::cpm() results in negative values from raw counts of 0

Answer: edgeR::cpm() results in negative values from raw counts of 0

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