Biostar Quality

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RNA-seq PCA control DESeq2 Quality

11 months ago • updated 8 months ago 9906201a ▴ 20

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folder quality QualityControl AffyExpress

2.1 years ago bastien_chassagnol • 0

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microarray quality

updated 4.0 years ago by Wolfgang Huber 13k • written 4.0 years ago by RV ▴ 10

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base quality quality mean base quality

updated 6.3 years ago by Mike Smith ★ 5.8k • written 6.3 years ago by christiangriffioen • 0

4 results • Page 1 of 1

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Comment: transcript name mapping between human and mouse by Eric • 0

It works very well, and thanks for such a great answer! Because I use the old version gtf from GENECODE (vM12), the id version does not mat…

Comment: How to normalize long-read RNA-seq data for comparison with short-reads by Bernardo • 0

Just did that, thank you for the suggestion.

Comment: Empty ChipQC Report by Okan • 0

Hi, I have the same issue. Have you found any solution or any reason why this is happening?

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

Am I understanding correctly that you have 24 RNA-seq libraries in total, 6 from the pooled samples and 18 from regular samples with biolog…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0

I'm sorry, I know it is kinda confusing... We have 6 pools in total: Phenotype A: T1a, T2, T1b, T1c Phenotype B: T1, T2 Each pool consist…

Votes

Answer: transcript name mapping between human and mouse

Comment: How to normalize long-read RNA-seq data for comparison with short-reads

Volcano Plot in R

Answer: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.

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