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Quality
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5
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First principal component variance stabilised RNA-seq data correlates with total read counts per sample / library concentration
RNA-seq
PCA
control
DESeq2
Quality
2.8 years ago • updated 2.6 years ago
9906201a
▴ 20
0
votes
0
replies
727
views
AffyExpress choose relative path folder
folder
quality
QualityControl
AffyExpress
4.0 years ago
bastien_chassagnol
• 0
0
votes
1
reply
1.0k
views
Array quality metrics for large sample size
microarray
quality
updated 5.8 years ago by
Wolfgang Huber
★ 13k • written 5.9 years ago by
RV
▴ 10
0
votes
3
replies
2.5k
views
what does "mean base quality" mean?
base quality
quality
mean base quality
updated 8.2 years ago by
Mike Smith
★ 6.6k • written 8.2 years ago by
christiangriffioen
• 0
4 results • Page
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Comment: sva: get a sv for RIN scores
by
gabriel.hoffman
▴ 170
Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.
Comment: RSubread output significantly different from bash Subread output
by
Aimee
• 0
Thank you! I will try rerunning with that parameter and see if it fixes the discrepancy! I'll report back. Update: This completely resolve…
Answer: RSubread output significantly different from bash Subread output
by
ATpoint
★ 4.6k
The R version counts multimappers (countMultiMappingReads is TRUE by default) while the command line version does not. It's beyond me why t…
Comment: Can't post a question?
by
Aimee
• 0
I copied my text to a file in linux and ran: ```r grep --color='auto' -P -n "[^\x00-\x7F]" filename.txt ``` It highlighted everything that…
Answer: sva: get a sv for RIN scores
by
Gordon Smyth
52k
Surrogate variables are not constructed from known variates, so one doesn't get surrogate variables for RIN scores. I am guessing that the …
Votes
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: How to annotate a limma Elist raw class object with an annotation file
Comment: How to annotate a limma Elist raw class object with an annotation file
QSEA- Extraction of Normalized methylation across the samples
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Dario Strbenac
★ 1.5k
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ATpoint
★ 4.6k
Popular Question
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Gordon Smyth
52k
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bhandary.8590
▴ 20
Popular Question
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Jiping Wang
▴ 90
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