Bioconductor RBGL

Showing : RBGL • reset

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RBGL RBGL

21.1 years ago Roels, Steven ▴ 50

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RBGL RBGL

updated 21.1 years ago by Jeff Gentry ★ 3.9k • written 21.1 years ago by Jeff Lande ▴ 110

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1.3k

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GO Biobase annotate genefilter graph RBGL GOstats GO Biobase annotate genefilter graph

updated 21.2 years ago by rgentleman ★ 5.5k • written 21.2 years ago by Dr Gyorffy Balazs ▴ 320

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1.5k

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Microarray Clustering Cancer affy graph SAGElyzer Rgraphviz Rdbi RBGL Microarray Cancer

updated 22.0 years ago by Douglas Bates ▴ 180 • written 22.0 years ago by Baker, Stephen ▴ 160

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Ruuid genefilter rhdf5 multtest affy graph Rgraphviz RBGL Ruuid genefilter rhdf5 affy

updated 22.0 years ago by Vincent J. Carey, Jr. 6.7k • written 22.0 years ago by Weiming Zhang ▴ 30

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1.6k

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Biobase Ruuid DynDoc tkWidgets affy graph Rgraphviz AnnBuilder RBGL PROcess Biobase

22.5 years ago madman@jimmy.harvard.edu ▴ 850

56 results • Page 2 of 2

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Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

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Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Comment: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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