Bioconductor RECOUNT2

Showing : RECOUNT2 • reset

1

vote

1

reply

1.9k

views

TCGAbiolinks RECOUNT2 DESeq2

updated 4.5 years ago by Michael Love 43k • written 4.5 years ago by xiaofeiwang18266 ▴ 60

0

votes

2

replies

2.1k

views

R TCGA recount2 recount

updated 5.5 years ago by Leonardo Collado Torres ★ 1.1k • written 5.6 years ago by alex.v.nesta • 0

3

votes

4

replies

1.9k

views

recount recount2 RangedSummarizedExperiment

updated 6.1 years ago by Leonardo Collado Torres ★ 1.1k • written 6.9 years ago by k.vitting.seerup ▴ 120

3 results • Page 1 of 1

Recent ...

Replies

Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Votes

Comment: Check removeBatchEffect effectiveness

Awards • All