Bioconductor RNASEQ

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DESeq2 RNAseq

updated 1 day ago by Michael Love 41k • written 1 day ago by kcarey • 0

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limma RNASeq voom

updated 3 days ago by Gordon Smyth 50k • written 3 days ago by taur.vil • 0

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155

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technicalReplicates BatchEffect limma RNASeq

6 days ago • updated 3 days ago catv • 0

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 7 days ago by Michael Love 41k • written 8 days ago by 09191919 • 0

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120

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limma edgeR RNASeq

updated 7 days ago by Gordon Smyth 50k • written 8 days ago by Shaimaa Gamal • 0

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121

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scRNAseq RNAseq

updated 15 days ago by ATpoint ★ 4.0k • written 17 days ago by Merav • 0

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816

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clusterProfiler RNASeq

updated 1 day ago by Guangchuang Yu ★ 1.2k • written 13 months ago by ruiqi.li ▴ 10

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887

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SingleCell RNASeq RNASeqData scRNAseq

updated 8 days ago by wichaidi • 0 • written 17 months ago by irvin.ng • 0

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690

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biomart rnaseq

written 5.2 years ago by jarod_v6@libero.it ▴ 40

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1.8k

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RNASeq edgeR RNASeq edgeR

updated 24 days ago by Gordon Smyth 50k • written 11.5 years ago by Maria Keays ▴ 30

10 results • Page 1 of 1

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0