Bioconductor RNASeq

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1.9k

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sgseq rnaseq

updated 2 days ago by Leonard Goldstein ▴ 220 • written 6.7 years ago by Sylvain Foisy ▴ 80

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165

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DESeq2 RNAseq

updated 23 days ago by Michael Love 42k • written 23 days ago by kcarey • 0

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125

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 29 days ago by Michael Love 42k • written 4 weeks ago by 09191919 • 0

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190

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limma RNASeq voom

written 25 days ago by taur.vil • 0

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304

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limma edgeR RNASeq

updated 8 days ago by Gordon Smyth 50k • written 4 weeks ago by Shaimaa Gamal • 0

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234

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DifferentialExpression TimeCourse timeOmics edgeR RNAseq

updated 3 days ago by Gordon Smyth 50k • written 4 days ago by Ashley • 0

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237

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technicalReplicates BatchEffect limma RNASeq

28 days ago • updated 26 days ago catv • 0

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221

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DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq

updated 16 days ago by ATpoint ★ 4.1k • written 16 days ago by james.zhang20 • 0

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890

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clusterProfiler RNASeq

updated 24 days ago by Guangchuang Yu ★ 1.2k • written 14 months ago by ruiqi.li ▴ 10

9 results • Page 1 of 1

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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0

The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180