Bioconductor RNASeqSampleSize

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RNASeq DifferentialExpression RnaSeqSampleSizeData RnaSeqSampleSize

updated 5 months ago by Gordon Smyth 51k • written 5 months ago by Shaimaa Gamal • 0

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295

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RnaSeqSampleSize

updated 5 months ago by ATpoint ★ 4.2k • written 5 months ago by Anudev • 0

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404

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RNASeqData RnaSeqSampleSize DESeq2

updated 6 months ago by James W. MacDonald 66k • written 6 months ago by Mimi • 0

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RNASeqData RnaSeqSampleSize RNASeq RNASeqPower

6 months ago drewhaydensteele • 0

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302

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RnaSeqSampleSize

updated 6 months ago by Basti ▴ 780 • written 6 months ago by Durga ▴ 10

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448

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RNASeqData RnaSeqSampleSize RNASeqPower RNASeq

updated 8 months ago by Basti ▴ 780 • written 8 months ago by Luke • 0

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SSPA ssizeRNA RnaSeqSampleSize

updated 9 months ago by James W. MacDonald 66k • written 9 months ago by Megan • 0

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RnaSeqSampleSize statistics DESeq2

updated 18 months ago by swbarnes2 ★ 1.4k • written 18 months ago by N • 0

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DESeq2 RNASeq RnaSeqSampleSize apeglm

updated 22 months ago by Michael Love 42k • written 22 months ago by Riley • 0

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553

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RnaSeqSampleSize

3.0 years ago Matthias Munz ▴ 10

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1.2k

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Taeniopygia_guttata_Data RnaSeqSampleSize

updated 3.5 years ago by ATpoint ★ 4.2k • written 3.5 years ago by melisa.eliana.magallanes • 0

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611

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RnaSeqSampleSize

updated 3.9 years ago by James W. MacDonald 66k • written 3.9 years ago by lcsaraiva0102 • 0

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723

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software error RnaSeqSampleSize r RNA-seq

5.2 years ago AZ ▴ 30

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758

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RNASeqSampleSize

5.7 years ago Adrian Johnson ▴ 330

14 results • Page 1 of 1

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Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100

Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz

Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k

The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …

Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k

You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.

Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0

In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…

Answer: Design formula, numeric contrast, and lfcshrink in deseq2 by Michael Love 42k

For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…

Votes

Comment: Most enriched pathway is not expressed when modifying universe parameter

Time-course, comparison of two groups

Answer: Behaviour of featureCounts when quantifying multi-mapping reads

Answer: GESA with certain gene list returns no result with human genom, but many result

Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`

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