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RSEM
•
reset
5
votes
9
replies
7.0k
views
Voom: need at least two non-NA values to interpolate
limma voom
voom
rsem
fpkm
9.2 years ago
komal.rathi
▴ 120
0
votes
8
replies
2.5k
views
Using Scran with RSEM/DEseq
scran
normalization
deseq2
rsem
edger
9.3 years ago
a.guerra
• 0
6
votes
4
replies
4.9k
views
RSEM expected counts to limma-voom
limma
voom
rsem
updated 9.4 years ago by
Gordon Smyth
53k • written 9.4 years ago by
Jake
▴ 90
4
votes
7
replies
2.3k
views
assigning differential exons to trascripts
dexseq
rsem
differential exon usage
differential gene expression
updated 9.4 years ago by
James W. MacDonald
68k • written 9.4 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
3
replies
2.5k
views
DESeq2 size factors estimation after RSEM quantification
deseq2
tximport
rsem
estimatesizefactors
9.5 years ago
Hugo Varet
▴ 80
55 results • Page
2 of 2
Recent ...
Replies
Comment: Large logFC but somewhat high FDR
by
Gordon Smyth
53k
I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```
Answer: p.adjust BH Question
by
Gordon Smyth
53k
Duplicate of https://support.bioconductor.org/p/41077/
Answer: Large logFC but somewhat high FDR
by
Gordon Smyth
53k
Glad you're getting good use out of the package. The results that you show seem pretty much as one would expect, with nothing surprising. …
Comment: After running samtools, the featureCounts command crashed.
by
MarcHintz99
• 0
Thanks for shairng https://subread.sourceforge.net/
Comment: Senior Teaching Fellow (MSc Computational Biomedicine)
by
eja.ger.m
• 0
Opportunities like this remind me how digital learning is evolving, much like modern mobile games. With programmes becoming fully online an…
Votes
Comment: upstream git branches of bioc-release
A: p.adjust BH generates duplicate values
Answer: gene Set with high AUC score but no cells assigned to cell type
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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