Bioconductor Estimatesizefactors

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704

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deseq2 estimatesizefactors

updated 5.1 years ago by Ryan C. Thompson 7.8k • written 5.1 years ago by owenchapman1 • 0

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1.0k

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deseq2 LRT geometric mean estimatesizefactors model.matrix

updated 5.2 years ago by Michael Love 41k • written 5.2 years ago by carol.brunel • 0

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5.0k

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deseq2 error R estimatesizefactors zero

updated 19 months ago by LW • 0 • written 6.2 years ago by abhishek.yedugondla • 0

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1.4k

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deseq2 estimatesizefactors

6.0 years ago Lauma R ▴ 10

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3.7k

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deseq2 estimatesizefactors

updated 7.0 years ago by Steve Lianoglou 13k • written 7.0 years ago by Assa Yeroslaviz ★ 1.5k

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1.9k

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deseq2 tximport rsem estimatesizefactors

7.6 years ago Hugo Varet ▴ 80

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9.0k

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deseq2 estimatesizefactors

updated 7.9 years ago by Michael Love 41k • written 7.9 years ago by ssabri ▴ 20

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1.8k

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phyloseq deseq2 estimatesizefactors

updated 8.0 years ago by Michael Love 41k • written 8.0 years ago by brandilyn.peters • 0

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1.9k

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estimatesizefactors deseq2

updated 8.1 years ago by Michael Love 41k • written 8.1 years ago by Mehmet Ilyas Cosacak • 0

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1.0k

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deseq2 estimatesizefactors

updated 8.7 years ago by Michael Love 41k • written 8.7 years ago by umut.caglar ▴ 10

10 results • Page 1 of 1

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Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and by Aastha Kapoor • 0

After several attempts the code has worked. I connected to a faster internet connection. set the timeout (1000000) and run the command. I …

Comment: DESeq2 estimateSizeFactors iterate takes too long by Karthik • 0

Hello, I agree with you, and we are in process of working with collaborators, but I wanted to get a general opinion on the data and get a …

Comment: It's possible to use clusterProfiler without an annotationDBI package by Guido Hooiveld ★ 3.8k

Code to show it works: > library(clusterProfiler) > > ## use provided 10 IDs, plus as last one add ID that has a GO annotati…

Comment: It's possible to use clusterProfiler without an annotationDBI package by Guido Hooiveld ★ 3.8k

You are almost there... Yet - pay attention to the error message (`--> No gene can be mapped.... --> Expected input gene ID: GO:0055080, .…

Comment: Problem loading HDF5Array in R 4.3.2 by Sarah • 0

Thanks for the reply! I tried this and it is crashing at `h5createFile("test.h5")` even after reinstalling **Rhdf5lib** and **rhdf5** It …

Votes

Answer: Limma/DESeq2 for unbalanced nested design (paired samples)

Result from GSEA for non-model organism not as expected

Comment: DESeq2 estimateSizeFactors iterate takes too long

Answer: DESeq2 estimateSizeFactors iterate takes too long

Comment: biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl

Awards • All

Scholar to Mike Smith ★ 6.2k

Scholar to Hervé Pagès 16k