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Rapidr
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RAPIDR analysis Pipeline
Rapidr
5.7 years ago
raya.girish
• 0
0
votes
1
reply
1.2k
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Reading BAM file for RapidR
RapidR
BAM
updated 8.1 years ago by
Aaron Lun
★ 28k • written 8.1 years ago by
Sushant Pawar
• 0
0
votes
6
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4.8k
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Package ‘GenomicRanges’ version 1.20.8 cannot be unloaded
rapidr
genomicranges
8.5 years ago
Pau Marc Muñoz Torres
▴ 20
0
votes
1
reply
987
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problem with in rapidr createReferenceSetFromCountss
rapidr
createReferenceSetFromCounts
8.6 years ago
Pau Marc Muñoz Torres
▴ 20
0
votes
3
replies
1.4k
views
Default Rapidr invalid class “SummarizedExperiment”
software error
RAPIDR
summarizeoverlaps
R
8.6 years ago
Pau Marc Muñoz Torres
▴ 20
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 30
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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