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RnaSeq
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22
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Comparing Mock vs Infected in WT and Knockout Cells
DESeq2
DifferentialExpression
DifferentialRegulation
RNASeq
GeneSetEnrichment
2 days ago
Sahil
• 0
0
votes
3
replies
313
views
How to compare expression levels of genes between scRNAseq and bulkRNAseq?
Seurat
RNASeq
DESeq2
scRNAseq
updated 6 days ago by
jodan
• 0 • written 14 days ago by
Quang NN
▴ 10
0
votes
1
reply
122
views
DEG analysis across multiple timepoints, treatments and tissues
DifferentialExpression
RNASeq
DESeq2
updated 11 days ago by
Michael Love
43k • written 12 days ago by
Sim
• 0
0
votes
1
reply
195
views
How to visualize these pathways using pathview
Salmo_salar
RNASeq
KEGG
pathview
updated 12 days ago by
Guido Hooiveld
★ 4.1k • written 12 days ago by
ingrid.h
• 0
0
votes
4
replies
905
views
Why select top highly expressed genes based on normalized counts, but then plot VST-transformed values in DESeq2 pheatmap?
RNASeq
DESeq2
14 days ago • updated 12 days ago
Quang NN
▴ 10
0
votes
3
replies
496
views
DESeq2 analysis with transcript counts
Transcriptomics
RNASeq
DESeq2
updated 5 days ago by
kahunroleh
• 0 • written 4 weeks ago by
sindhuri
• 0
0
votes
5
replies
564
views
Identifying potentially associated gene set to drug response using GSVA
drug
RNASeq
GSVA
written 11 weeks ago by
Kent
• 0
3
votes
5
replies
4.8k
views
plotMDS in edgeR
edger
rnaseq
written 9.4 years ago by
gthm
▴ 30
8 results • Page
1 of 1
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Comment: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis
by
Blair
• 0
@[Sprunki][1] wrote: Please read the vignette and think about adhering to the author's best practice, which discusses batch impacts. [1…
Comment: error in ChAMP loading file
by
81becky
• 0
hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…
Answer: DESeq2 adujsted p-value cutoff seemingly not working
by
James W. MacDonald
68k
From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
by
SofieK
• 0
Thank you, I will try this and see.
Comment: DiffBind - question on the use of filtered or unfiltered input data
by
deltaexploitss
• 0
Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…
Votes
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
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