Bioconductor RnaSeq

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1.7k

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sgseq rnaseq

updated 16 hours ago by Leonard Goldstein ▴ 200 • written 6.7 years ago by Sylvain Foisy ▴ 80

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122

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DESeq2 RNAseq

updated 6 days ago by Michael Love 41k • written 7 days ago by kcarey • 0

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129

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limma RNASeq voom

updated 8 days ago by Gordon Smyth 50k • written 8 days ago by taur.vil • 0

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191

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technicalReplicates BatchEffect limma RNASeq

12 days ago • updated 9 days ago catv • 0

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154

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limma edgeR RNASeq

updated 12 days ago by Gordon Smyth 50k • written 13 days ago by Shaimaa Gamal • 0

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 13 days ago by Michael Love 41k • written 13 days ago by 09191919 • 0

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131

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scRNAseq RNAseq

updated 21 days ago by ATpoint ★ 4.1k • written 23 days ago by Merav • 0

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843

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clusterProfiler RNASeq

updated 7 days ago by Guangchuang Yu ★ 1.2k • written 14 months ago by ruiqi.li ▴ 10

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903

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SingleCell RNASeq RNASeqData scRNAseq

updated 14 days ago by wichaidi • 0 • written 17 months ago by irvin.ng • 0

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1.8k

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RNASeq edgeR RNASeq edgeR

updated 29 days ago by Gordon Smyth 50k • written 11.5 years ago by Maria Keays ▴ 30

10 results • Page 1 of 1

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Comment: Store output of matchPWM() by James W. MacDonald 65k

Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…

Comment: DEseq2 coefficient by JKim • 0

Hi Dr. Love, I'm sorry to ask another question to my old post. If the design isn't balanced, the interpretation of coefficients will be…

Comment: Store output of matchPWM() by mat149 ▴ 70

out <- do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) Error in do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) : '…

Answer: Store output of matchPWM() by James W. MacDonald 65k

Something like this? ``` ind <- as.logical(sapply(hitlist, length)) out <- do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) …

Answer: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k

This has been asked before, but with a multi factor design, the LFC for coefficient X adjust for the others, in a way that is often hard to…

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SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

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