Bioconductor Scater

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runUMAP scater Matrix

updated 8 weeks ago by Hervé Pagès 16k • written 5 months ago by inzirio ▴ 10

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plotHeatmap scater

10 months ago Alina • 0

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scuttle scater

updated 8 months ago by ATpoint ★ 4.0k • written 8 months ago by Abbi Edwards • 0

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scater runPCA

updated 4 weeks ago by alan.ocallaghan ▴ 160 • written 5 weeks ago by Najla Abassi • 0

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scater

updated 12 weeks ago by alan.ocallaghan ▴ 160 • written 12 weeks ago by Dario Strbenac ★ 1.5k

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scater

updated 3 months ago by alan.ocallaghan ▴ 160 • written 3 months ago by Dario Strbenac ★ 1.5k

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scran bluster scater scuttle

updated 4 weeks ago by ATpoint ★ 4.0k • written 4 weeks ago by Dario Strbenac ★ 1.5k

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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

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Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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