Bioconductor Scater

Showing : Scater • reset

votes

replies

390

views

scater runPCA

updated 5 weeks ago by alan.ocallaghan ▴ 160 • written 5 weeks ago by Najla Abassi • 0

votes

231

views

scran bluster scater scuttle

updated 5 weeks ago by ATpoint ★ 4.1k • written 5 weeks ago by Dario Strbenac ★ 1.5k

vote

replies

6.6k

views

runUMAP scater Matrix

updated 8 weeks ago by Hervé Pagès 16k • written 5 months ago by inzirio ▴ 10

votes

replies

360

views

scater

updated 3 months ago by alan.ocallaghan ▴ 160 • written 3 months ago by Dario Strbenac ★ 1.5k

vote

245

views

scater

updated 3 months ago by alan.ocallaghan ▴ 160 • written 3 months ago by Dario Strbenac ★ 1.5k

votes

replies

1.1k

views

scuttle scater

updated 8 months ago by ATpoint ★ 4.1k • written 8 months ago by Abbi Edwards • 0

votes

replies

870

views

plotHeatmap scater

10 months ago Alina • 0

7 results • Page 1 of 1

Recent ...

Replies

Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

Votes

Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

Awards • All

Popular Question to gene_bioconductor ▴ 10

Popular Question to rohitsatyam102 ▴ 20