Showing : Scater • reset
3
votes
3
replies
363
views
plotUMAP Gene Set Faceted
scater
updated 3 months ago by ▴ 160 • written 3 months ago by ★ 1.5k
3
votes
3
replies
392
views
Function 'sexp_as_cholmod_sparse' doesn't exist in the package 'Matrix'
scater runPCA
updated 5 weeks ago by ▴ 160 • written 5 weeks ago by • 0
2
votes
1
reply
232
views
Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Comparison
scran bluster scater scuttle
updated 5 weeks ago by ★ 4.1k • written 5 weeks ago by ★ 1.5k
1
vote
1
reply
245
views
plotUMAP and ggplotly Cell IDs Display
scater
updated 3 months ago by ▴ 160 • written 3 months ago by ★ 1.5k
1
vote
7
replies
6.6k
views
scater runUMAP fails with error "function 'as_cholmod_sparse' not provided by package 'Matrix'"
runUMAP scater Matrix
updated 8 weeks ago by 16k • written 5 months ago by ▴ 10
0
votes
3
replies
1.1k
views
Is logNormCounts log2 normalised counts as default?
scuttle scater
updated 8 months ago by ★ 4.1k • written 8 months ago by • 0
0
votes
6
replies
871
views
plotHeatmap annotation error
plotHeatmap scater
10 months ago Alina • 0
7 results • Page 1 of 1
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Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis by Aurora • 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Votes
stuck on unimplemented type 'list' in 'EncodeElement'
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
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