Biostar SingleCellMultiModal

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SingleCell SingleCellMultiModal allele

updated 5 months ago by Michael Love 39k • written 5 months ago by oliver.crook • 0

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SingleCellWorkflow DifferentialExpression SingleCell SingleCellMultiModal MAST

8 months ago Nik Tuzov ▴ 80

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SingleCellMultiModal ensembldb rtracklayer Annotation

updated 8 weeks ago by rbj • 0 • written 3 months ago by Jake ▴ 10

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Answer: Are polynomial contrasts for a time factor possible in DESeq2? by ATpoint ★ 2.3k

As you can use a model.matrix() as input for the design you can use a great variety of models. A great read is this work from Ritchie/Smyth…

Comment: does anyone how to create rarefaction curves from a phyloseq object? by RMiller • 0

I am not sure what you have tried, but the "vegan" library (package) has the ability to do rarefaction. So make sure to load `library("veg…

Answer: MSA package fails to be installed - installation of package ‘msa’ had non-zero by stitam • 0

Hi, I came across the same issue when trying to install `msa` in a docker (singularity) container. My base image was `debian:bullseye-20230…

Comment: deseq2 nested multifactorial analysis by Basti ▴ 700

The information on genotype is included in the condition : all Control_1 are A, all Control_2 are B The condition variable is sufficient to…

Comment: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R by Yang Shi ▴ 10

Thanks for your reply sir!

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