Showing : Swish • reset
5
votes
9
replies
1.6k
views
Questions regarding failing tximeta import for swish
swish fishpond GenomicFeatures tximeta
updated 21 months ago by 42k • written 2.1 years ago by • 0
4
votes
7
replies
1.1k
views
Fishpond/Swish Interaction Test Error
fishpond swish
11 months ago Miguel ▴ 20
3
votes
2
replies
883
views
the result of swish function from fishpond package
fishpond swish
updated 3.9 years ago by 42k • written 3.9 years ago by • 0
3
votes
6
replies
1.3k
views
Swish with covariate for batch effect
swish fishpond
3.6 years ago thomas.dugedebernonville • 0
3
votes
5
replies
1.3k
views
Swish (fishpond) scaled counts result
Swish fishpond
3.3 years ago • updated 3.2 years ago 675743 ▴ 20
2
votes
2
replies
2.1k
views
Volcano plots of DEGs from Swish are weird
DESeq2 fishpond salmon swish
2.7 years ago Qin ▴ 10
1
vote
1
reply
1.0k
views
Swish with more than two conditions. Add support for contrasts?
tximeta DESeq2 swish fishpond
updated 2.3 years ago by 42k • written 2.3 years ago by ▴ 20
1
vote
3
replies
1.4k
views
Two Genotypes Four Treatments RNA-seq Analysis
salmon rna-seq swish bootstrap fishpond
updated 2.3 years ago by 42k • written 2.3 years ago by • 0
1
vote
3
replies
1.7k
views
miRNA differential expression analysis - treat as transcript level?
tximport DESeq2 edgeR swish miRNA
updated 23 months ago by 42k • written 23 months ago by • 0
0
votes
8
replies
1.4k
views
Swish log2FC NA output
swish fishpond DifferentialExpression
21 months ago jvandinter • 0
0
votes
8
replies
1.4k
views
swish in a blocking design?
fishpond swish
2.2 years ago msll0802 • 0
0
votes
6
replies
1.4k
views
Running swish on a non-reference transcript assembly / tximeta import issue
tximeta swish fishpond
updated 3.1 years ago by 42k • written 3.1 years ago by • 0
0
votes
3
replies
711
views
Fishpond with unbalanced dataset
rna-seq salmon fishpond swish
updated 11 months ago by 42k • written 11 months ago by • 0
0
votes
3
replies
325
views
Interaction tests and paired interaction tests in swish
swish salmon fishpond
updated 3 months ago by 42k • written 3 months ago by • 0
14 results • Page 1 of 1
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Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
Good day ATpoint, Could you pls advise also ehy this error could happened design contains one or more variables with all samples having t…
Comment: How to run allelic imbalance in apeglm by euge.eugenio ▴ 20
@mikelove could you help me? Thanks!
Comment: ENCORI or starBase : ceRNA data retrieval using Web API and curl by ATpoint ★ 4.1k
This is not related to Bioconductor. Biostars is more suited where you posted already.
Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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