Bioconductor TissueEnrich

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TissueEnrich

4.1 years ago sarvesh.nikumbh ▴ 10

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TissueEnrich

updated 5.2 years ago by Ashish Jain ▴ 10 • written 5.2 years ago by xiaoxiaoxiaobu • 0

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TissueEnrich

updated 6.5 years ago by Ashish Jain ▴ 10 • written 6.5 years ago by Carina Yang • 0

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TissueEnrich

updated 6.9 years ago by Ashish Jain ▴ 10 • written 6.9 years ago by fshodan • 0

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rna-seq TissueEnrich tissue-specific expression differential expression

updated 6.9 years ago by Ashish Jain ▴ 10 • written 6.9 years ago by andrew.oler • 0

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Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

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Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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