Bioconductor TissueEnrich

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TissueEnrich

3.1 years ago sarvesh.nikumbh ▴ 10

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TissueEnrich

updated 4.3 years ago by Ashish Jain ▴ 10 • written 4.3 years ago by xiaoxiaoxiaobu • 0

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TissueEnrich

updated 5.6 years ago by Ashish Jain ▴ 10 • written 5.6 years ago by Carina Yang • 0

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TissueEnrich

updated 5.9 years ago by Ashish Jain ▴ 10 • written 5.9 years ago by fshodan • 0

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rna-seq TissueEnrich tissue-specific expression differential expression

updated 5.9 years ago by Ashish Jain ▴ 10 • written 5.9 years ago by andrew.oler • 0

5 results • Page 1 of 1

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Answer: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Just fit a model `~condition + experiment` where `condition` has three levels A, B and C. Ideally, use limma and include duplicate correlat…

Comment: Error in get_anno_data(ontology) : ontology not supported yet... by GODseeker • 0

thank u so much ,god bless u,my dear friend.

Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi @gordonsmyth and @weishi, Firstly, thank you for offering your time to develop the junction quantification module further. This is gre…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Hi Tim, Thanks for your reply! Yes, my data is 450K, and it is TCGA methylation data downloaded by TCGAbiolinks. The problem is that I can …

Answer: Error in get_anno_data(ontology) : ontology not supported yet... by Guido Hooiveld ★ 4.1k

Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…

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A: Advice on correcting for batch effect using DESeq2

Comment: Feature Counts - potential bug with outfile.jcounts

Answer: Feature Counts - potential bug with outfile.jcounts

Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

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Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k