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TissueEnrich
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Example from TissueEnrich documentation throws error
TissueEnrich
2.5 years ago
sarvesh.nikumbh
▴ 10
0
votes
4
replies
1.0k
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Gene classification in TissueEnrich
TissueEnrich
updated 3.6 years ago by
Ashish Jain
▴ 10 • written 3.6 years ago by
xiaoxiaoxiaobu
• 0
0
votes
2
replies
704
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can TissueEnrich be used to calculate the tissue-specific lncRNAs in plants?
TissueEnrich
updated 4.9 years ago by
Ashish Jain
▴ 10 • written 4.9 years ago by
Carina Yang
• 0
0
votes
1
reply
799
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Overall genes number in the TissueEnrich package output
TissueEnrich
updated 5.3 years ago by
Ashish Jain
▴ 10 • written 5.3 years ago by
fshodan
• 0
0
votes
3
replies
1.5k
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How to handle replicates and treatment conditions in TissueEnrich package
rna-seq
TissueEnrich
tissue-specific expression
differential expression
updated 5.3 years ago by
Ashish Jain
▴ 10 • written 5.3 years ago by
andrew.oler
• 0
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Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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