Bioconductor TxDb.Mmusculus.UCSC.mm10.ensGene

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TxDb.Mmusculus.UCSC.mm10.ensGene TxDb karyoploteR

7 days ago • updated 6 days ago remi-xavier.coux ▴ 10

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TxDb.Mmusculus.UCSC.mm10.ensGene DESeq2 tximport

3.6 years ago zli1 • 0

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TxDb.Hsapiens.UCSC.hg38.knownGene TxDb.Mmusculus.UCSC.mm10.ensGene

updated 5.1 years ago by James W. MacDonald 67k • written 5.1 years ago by Aditya ▴ 160

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TxDb.Mmusculus.UCSC.mm10.ensGene

updated 6.5 years ago by Martin Morgan 25k • written 6.5 years ago by 674139534 • 0

4 results • Page 1 of 1

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Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k

You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…

Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k

Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

That's odd. So it can run successfully within markdown but would be failed when knitting?

Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0

> dim(spe) [1] 19962 425

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Answer: contrast matrix design for a continuous variable

A: What's the difference between p.adjust and qvalue?

Answer: DESeq2- merging technical vs biological replicates

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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Popular Question to Ou, Jianhong ★ 1.3k