Bioconductor KaryoploteR

Showing : karyoploteR • reset

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TxDb.Mmusculus.UCSC.mm10.ensGene TxDb karyoploteR

14 months ago remi-xavier.coux ▴ 10

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1.0k

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GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene

2.8 years ago Shreyash ▴ 10

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2.5k

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BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome

updated 3.4 years ago by James W. MacDonald 68k • written 3.4 years ago by rtt100 • 0

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1.3k

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KaryoploteR

updated 5.4 years ago by Kevin Blighe ★ 4.0k • written 5.4 years ago by mpigozzi • 0

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4.4k

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karyoploter

updated 6.4 years ago by bernatgel ▴ 150 • written 6.4 years ago by Aditya ▴ 160

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1.8k

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karyoploteR

updated 6.8 years ago by bernatgel ▴ 150 • written 6.8 years ago by saeed Ur Rehman • 0

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2.5k

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software error R bsgenome karyoploter

updated 8.3 years ago by bernatgel ▴ 150 • written 8.3 years ago by kirannbishwa01 ▴ 20

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1.8k

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karyoploter

updated 8.4 years ago by bgel ▴ 10 • written 8.4 years ago by spr ▴ 10

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1.4k

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KaryoploteR

8.6 years ago Radek ▴ 90

9 results • Page 1 of 1

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Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20

Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?

Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0

Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

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Popular Question to Guido Hooiveld ★ 4.1k