Bioconductor TxDb.Mmusculus.UCSC.mm9.knownGene

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TxDb.Mmusculus.UCSC.mm9.knownGene ensembldb GenomicFeatures Mus_musculus

updated 8 months ago by James W. MacDonald 67k • written 8 months ago by ramonmassoni ▴ 10

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annotatePeak chipseeker chipseq org.Mm.eg.db TxDb.Mmusculus.UCSC.mm9.knownGene

updated 9.1 years ago by Martin Morgan 25k • written 9.3 years ago by Elsa • 0

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software error txdb.mmusculus.ucsc.mm9.knowngene genomicfeatures

updated 9.8 years ago by Hervé Pagès 16k • written 9.8 years ago by nathan.harmston • 0

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Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…

Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Not really, we are testing some toxic compounds to identify genes that are activated in response to the toxic exposure. Genes that change o…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Hi again, Thank you for the response! Can you expound on why it is not a good idea? I realize that the expression levels/differential expr…

Answer: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

No, that's not a good idea at all. You should be doing a meta-analysis with these data rather than trying to combine like that. `GeneMeta` …

Answer: GOstats kegg analysis in wheat - help - none of the objects in the first column by James W. MacDonald 67k

Check the help page for `KEGGFrame`. Your columns are out of order.

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Answer: DecideTest vs topTAGs in edgeR

Comment: DESeq Input from Salmon + tximport/tximeta

Answer: DESeq Input from Salmon + tximport/tximeta

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Popular Question to Assa Yeroslaviz ★ 1.5k