Bioconductor VRanges

Showing : VRanges • reset

votes

replies

860

views

somaticsignatures vranges readvcfasvranges

6.2 years ago guillaume.dachy • 0

votes

replies

1.9k

views

variantannotation vcf readvcf vranges

updated 6.4 years ago by Michael Lawrence ★ 11k • written 6.4 years ago by david.mas • 0

votes

replies

1.4k

views

variantannotation VRanges R Rle

updated 6.4 years ago by Valerie Obenchain ★ 6.8k • written 6.4 years ago by Jayendra Shinde • 0

vote

replies

1.9k

views

somaticsignatures somaticsignatures package readvcfasvranges vranges

7.3 years ago • updated 7.2 years ago guillaume.dachy • 0

votes

replies

1.5k

views

vranges vcf to vranges

7.8 years ago Bogdan ▴ 670

vote

replies

2.0k

views

somaticsignatures vranges

updated 8.4 years ago by Julian Gehring ★ 1.3k • written 8.4 years ago by arsala521 ▴ 10

vote

replies

1.7k

views

granges vranges readvcfasvranges somaticsignatures

updated 8.6 years ago by Michael Lawrence ★ 11k • written 8.6 years ago by jpluta26 • 0

votes

replies

2.3k

views

SomaticSignatures mutationContext VRanges

updated 9.2 years ago by Julian Gehring ★ 1.3k • written 9.2 years ago by tesa.severson ▴ 10

votes

replies

2.5k

views

variantannotation vranges readvcf readvcfasvranges metadata

9.7 years ago summerela • 0

votes

replies

3.4k

views

variantannotation granges DNAStringSetList findoverlaps Vranges

9.7 years ago summerela • 0

10 results • Page 1 of 1

Recent ...

Replies

Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: ESTMATE, MCPcounter, EPIC, xCell input by Kang • 0

These are not, as far as I know, bioconductor packages. You should query on the websites for those specific software programs. @[mapquest][…

Comment: Robust way of dealing with low number of samples for Differential Gene Expressio by Kang • 0

I believe that pseudo-bulking is a strong way to approach DE, as long as it is possible to reliably identify the cell type across data and …

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

Awards • All

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k