Bioconductor VRanges

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1.1k

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somaticsignatures vranges readvcfasvranges

7.2 years ago guillaume.dachy • 0

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2.3k

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variantannotation vcf readvcf vranges

updated 7.3 years ago by Michael Lawrence ★ 11k • written 7.3 years ago by david.mas • 0

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1.6k

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variantannotation VRanges R Rle

updated 7.4 years ago by Valerie Obenchain ★ 6.8k • written 7.4 years ago by Jayendra Shinde • 0

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2.2k

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somaticsignatures somaticsignatures package readvcfasvranges vranges

8.3 years ago • updated 8.2 years ago guillaume.dachy • 0

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1.7k

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vranges vcf to vranges

8.8 years ago Bogdan ▴ 670

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2.3k

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somaticsignatures vranges

updated 9.4 years ago by Julian Gehring ★ 1.3k • written 9.4 years ago by arsala521 ▴ 10

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2.0k

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granges vranges readvcfasvranges somaticsignatures

updated 9.6 years ago by Michael Lawrence ★ 11k • written 9.6 years ago by jpluta26 • 0

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2.8k

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SomaticSignatures mutationContext VRanges

updated 10.2 years ago by Julian Gehring ★ 1.3k • written 10.2 years ago by tesa.severson ▴ 10

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variantannotation vranges readvcf readvcfasvranges metadata

10.7 years ago summerela • 0

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3.9k

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variantannotation granges DNAStringSetList findoverlaps Vranges

10.7 years ago summerela • 0

10 results • Page 1 of 1

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Comment: After running samtools, the featureCounts command crashed. by eja.gssssse.r.m • 0

The buffer overflow detected error in your featureCount step usually indicates that the program is trying to write more data into memory …

Comment: gene Set with high AUC score but no cells assigned to cell type by eja.gssssse.r.m • 0

It sounds like your AUCell results may be showing high AUC scores without cell assignment due to thresholding or scoring cutoffs. Think of …

Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k

This should now be resolved

Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k

I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…

Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0

Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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Popular Question to Fred Hutch (Recruiting) ▴ 40