Bioconductor VRanges

Showing : VRanges • reset

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somaticsignatures vranges readvcfasvranges

7.3 years ago guillaume.dachy • 0

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variantannotation vcf readvcf vranges

updated 7.4 years ago by Michael Lawrence ★ 11k • written 7.4 years ago by david.mas • 0

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variantannotation VRanges R Rle

updated 7.4 years ago by Valerie Obenchain ★ 6.8k • written 7.4 years ago by Jayendra Shinde • 0

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somaticsignatures somaticsignatures package readvcfasvranges vranges

8.3 years ago • updated 8.2 years ago guillaume.dachy • 0

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vranges vcf to vranges

8.9 years ago Bogdan ▴ 670

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somaticsignatures vranges

updated 9.4 years ago by Julian Gehring ★ 1.3k • written 9.4 years ago by arsala521 ▴ 10

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granges vranges readvcfasvranges somaticsignatures

updated 9.7 years ago by Michael Lawrence ★ 11k • written 9.7 years ago by jpluta26 • 0

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SomaticSignatures mutationContext VRanges

updated 10.2 years ago by Julian Gehring ★ 1.3k • written 10.2 years ago by tesa.severson ▴ 10

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variantannotation vranges readvcf readvcfasvranges metadata

10.8 years ago summerela • 0

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variantannotation granges DNAStringSetList findoverlaps Vranges

10.8 years ago summerela • 0

10 results • Page 1 of 1

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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Comment: upstream git branches of bioc-release by Jeroen ▴ 10

OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.

Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k

I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```

Votes

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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