Bioconductor VRanges

Showing : VRanges • reset

votes

replies

1.1k

views

somaticsignatures vranges readvcfasvranges

7.4 years ago guillaume.dachy • 0

votes

replies

2.4k

views

variantannotation vcf readvcf vranges

updated 7.5 years ago by Michael Lawrence ★ 11k • written 7.5 years ago by david.mas • 0

votes

replies

1.7k

views

variantannotation VRanges R Rle

updated 7.6 years ago by Valerie Obenchain ★ 6.8k • written 7.6 years ago by Jayendra Shinde • 0

vote

replies

2.2k

views

somaticsignatures somaticsignatures package readvcfasvranges vranges

8.5 years ago • updated 8.4 years ago guillaume.dachy • 0

votes

replies

1.8k

views

vranges vcf to vranges

9.0 years ago Bogdan ▴ 670

vote

replies

2.4k

views

somaticsignatures vranges

updated 9.6 years ago by Julian Gehring ★ 1.3k • written 9.6 years ago by arsala521 ▴ 10

vote

replies

2.1k

views

granges vranges readvcfasvranges somaticsignatures

updated 9.8 years ago by Michael Lawrence ★ 11k • written 9.8 years ago by jpluta26 • 0

votes

replies

2.9k

views

SomaticSignatures mutationContext VRanges

updated 10.4 years ago by Julian Gehring ★ 1.3k • written 10.4 years ago by tesa.severson ▴ 10

votes

replies

3.1k

views

variantannotation vranges readvcf readvcfasvranges metadata

10.9 years ago summerela • 0

votes

replies

4.2k

views

variantannotation granges DNAStringSetList findoverlaps Vranges

10.9 years ago summerela • 0

10 results • Page 1 of 1

Recent ...

Replies

Comment: Pairwise comparison of multiple groups with different base by ja569116 • 0

Hi @mikelove I have a similar situation, and I feel that I have interpreted the results in the wrong way. In my case I would like to identi…

Comment: Are individual-mouse-based statistics possible in CellChat? by TikTsossakaas33ocissalpc • 0

Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…

Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0

Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …

Answer: limpa analysis advice by Gordon Smyth 53k

It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…

Answer: When to use edgeR or limma by Gordon Smyth 53k

The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…

Votes

Answer: When to use edgeR or limma

A: deseq2 - paired samples in 2 sequencing types with very different library sizes

Awards • All

Popular Question to Lluís Revilla Sancho ▴ 760