Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
readvcf
•
reset
0
votes
0
replies
274
views
VariantAnnotation::readVcf incorrectly processes GATK Mutect2 vcf INFO field AS_SB_TABLE
vcf
AS_SB_TABLE
readVcf
Mutect2
VariantAnnotation
7 months ago
therealgenna
• 0
1
vote
12
replies
2.3k
views
readVcf does not recognize tabix index
VariantAnnotation
readvcf
tabix
updated 2.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 2.5 years ago by
naive
• 0
0
votes
2
replies
907
views
readVCF requires the argument "genome". What does it stand for?
Genome
readVcf
VariantAnnotation
2.5 years ago
naive
• 0
3
votes
4
replies
1.4k
views
Problem when transforming Platypus vcf to VRanges
variantannotation
vcf
readvcf
vranges
updated 5.2 years ago by
Michael Lawrence
11k • written 5.2 years ago by
david.mas
• 0
2
votes
5
replies
2.3k
views
VariantAnnotation: Error with ScanVcfParam
variantannotation
vcf
readvcf
filtervcf
scanvcfparam
6.1 years ago
Didi
▴ 10
1
vote
4
replies
1.9k
views
cannot allocate memory?
readVcf
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
Haiying.Kong
▴ 110
0
votes
2
replies
916
views
does readVcf mistakenly ignore ploidy for missing genotypes?
readvcf
gt
missing
VariantAnnotation
6.6 years ago
TimothéeFlutre
▴ 80
2
votes
4
replies
1.5k
views
Best way to create a VRanges object from a large VCF file?
variantannotation
readvcf
readvcfasvranges
vcf
updated 6.7 years ago by
Michael Lawrence
11k • written 6.7 years ago by
ruben.drews
• 0
0
votes
2
replies
1.4k
views
Subsetting info columns from a VCF and getting rsID for some row names?
R
variantannotation
vcf
scanvcfparam
readvcf
updated 7.3 years ago by
Michael Lawrence
11k • written 7.3 years ago by
emily.mccann
• 0
0
votes
2
replies
1.3k
views
Duplicated rows in readVcf output
variantannotation
readvcf
updated 7.5 years ago by
Valerie Obenchain
★ 6.8k • written 7.5 years ago by
nicolas.o.rode
• 0
0
votes
1
reply
1.4k
views
mutational signatures problems
bsgenome
readvcf
tcga
annotation
somaticsignatures
updated 7.6 years ago by
Julian Gehring
★ 1.3k • written 7.6 years ago by
jolligoodfellow
• 0
0
votes
4
replies
2.5k
views
How to import vcf with multi sample?
vcf
readvcf
readvcfasvranges
7.7 years ago
Marcin Grzybowski
• 0
1
vote
1
reply
979
views
Suppressing the ID value from writeVcf
readvcf
writevcf
updated 7.8 years ago by
Valerie Obenchain
★ 6.8k • written 7.9 years ago by
fongchunchan
▴ 30
2
votes
1
reply
1.2k
views
readVCF with 1000 genomes data from 20130502 fails to return genotype information
readvcf
vcf
tabix
updated 8.2 years ago by
Valerie Obenchain
★ 6.8k • written 8.2 years ago by
Simon Coetzee
▴ 50
2
votes
9
replies
2.3k
views
ReadVCF not reading samples
readvcf
vcf
variantannotation
8.4 years ago • updated 8.3 years ago
askates
▴ 10
0
votes
21
replies
3.7k
views
VariantAnnotation Errors and void outputs
variantannotation
readvcf
8.4 years ago
pifferdavide
• 0
1
vote
5
replies
3.9k
views
Converting a DNAStringSetList to characters quickly
readVcf
DNAStringSet
DNAStringSetList
variantannotation
readvcf
8.4 years ago
dan.gatti
• 0
0
votes
2
replies
1.9k
views
Error reading vcf converted from bed file
readvcf
plink
file conversion
bed
bioc-devel
8.5 years ago
mjsduncan
• 0
2
votes
3
replies
1.9k
views
Metadata Missing from vcf when reading in with readVcfAsVRanges
variantannotation
vranges
readvcf
readvcfasvranges
metadata
8.6 years ago
summerela
• 0
1
vote
12
replies
2.6k
views
VariantAnnotation: no method for function 'path' for signature 'character'
variantannotation
readvcf
readgt
updated 8.8 years ago by
Valerie Obenchain
★ 6.8k • written 8.8 years ago by
Kipper Fletez-Brant
▴ 150
0
votes
1
reply
1.4k
views
readVCF (VariantAnnotation) problem with mismatched header and info fields in vcf file
annotation
vcf
readvcf
variantannotation
8.8 years ago
jls2282
• 0
2
votes
3
replies
1.1k
views
readVcf skipping CS field in INFO
variantannotation
readVcf
updated 8.9 years ago by
Valerie Obenchain
★ 6.8k • written 8.9 years ago by
Peter Hickey
▴ 650
0
votes
5
replies
1.5k
views
VariantAnnotation VCF read error
variantannotation
readvcf
updated 8.9 years ago by
Valerie Obenchain
★ 6.8k • written 8.9 years ago by
JK
▴ 10
23 results • Page
1 of 1
Recent ...
Replies
Comment: LIMMA dupcor() function time issue.
by
Gordon Smyth
48k
That's ok, but there is nothing to be gained by subsetting 1000 times. It would be better to simply subset 100,000 rows once, although the …
Comment: Specifying evidence channels in STRINGdb
by
robynne.braun
• 0
Also I found prior thread here addressing the same question with response that functionality will be supported someday. This was a few year…
Comment: Problems with FLOWAI
by
SHASHI
• 0
please try this using short path name and keeping your fcs file and wsp file in your local directory https://youtu.be/xLeqE7PNYzA
Comment: DataFrame Construction With Non-standard Column
by
Hervé Pagès
16k
SimpleList is a List derivative and List derivatives in general don't need protection. For example, a GRangesList object (which is also a L…
Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu
by
swbarnes2
★ 1.3k
The Status grouping you show above is good to use if you want to simply compare one subset of samples to another subset. The ~Genotype +…
Votes
Answer: Deseq2, enrichGO and ensembl ID
A: LIMMA dupcor() function time issue.
A: LIMMA dupcor() function time issue.
Answer: Further analysis after limma regression output
A: collapseReplicates in DESeq2
Awards
• All
Popular Question
to
Bogdan
▴ 660
Popular Question
to
Michael Love
40k
Scholar
to
James W. MacDonald
63k
Popular Question
to
Theo
• 0
Popular Question
to
Wolfgang Huber
13k
Locations
• All
United States,
3 minutes ago
United States,
4 minutes ago
Melbourne, Australia,
27 minutes ago
United States,
29 minutes ago
Germany,
41 minutes ago
Traffic: 312 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6