Bioconductor Metadata

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644

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metadata

2.3 years ago Donghui ▴ 10

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925

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rtracklayer Rsamtools GAlignments GRanges metadata

updated 3.3 years ago by Hervé Pagès 16k • written 3.3 years ago by Robert ▴ 10

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881

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deseq2 design metadata

updated 3.7 years ago by sebastian.lobentanzer ▴ 50 • written 3.7 years ago by Assa Yeroslaviz ★ 1.5k

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881

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recount metadata tcga

updated 5.6 years ago by rosabellascottgm • 0 • written 5.6 years ago by Mariela Cortés-López • 0

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1.1k

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variantannotation locatevariants metadata mcols

updated 5.8 years ago by Valerie Obenchain ★ 6.8k • written 5.8 years ago by enricoferrero ▴ 660

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4.1k

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granges metadata

updated 6.3 years ago by Michael Lawrence 11k • written 6.3 years ago by Ryan C. Thompson 7.8k

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925

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metadata grangeslist granges sample

updated 6.4 years ago by Michael Lawrence 11k • written 6.4 years ago by Sim1pall8a • 0

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1.8k

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GRanges metadata subsetting

updated 7.1 years ago by Michael Lawrence 11k • written 7.1 years ago by mdeea123 ▴ 10

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1.6k

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granges metadata coursera

updated 7.3 years ago by Michael Lawrence 11k • written 7.3 years ago by likeeatingpizza ▴ 10

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1.1k

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genomicfeatures txdb maketxdbfromgff metadata

updated 7.4 years ago by Valerie Obenchain ★ 6.8k • written 7.4 years ago by TimothéeFlutre ▴ 80

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1.9k

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variantannotation vranges readvcf readvcfasvranges metadata

8.6 years ago summerela • 0

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1.6k

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grangeslist metadata

8.9 years ago Robert K. Bradley ▴ 40

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Comment: List of Deprecated Packages for Bioc3.18 by Hervé Pagès 16k

Also the source package is not available [in BioC 3.17](https://bioconductor.org/packages/3.17/CancerInSilico) which means that the package…

Answer: DelayedArray::read_sparse_block by Hervé Pagès 16k

Hi Koki, Sorry again for the slow response. `read_sparse_block()` has been around for years. It's a generic function defined in the *…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

Sorry for missing that one too. When writting blocks to an HDF5 file, the `write_block()` method for HDF5RealizationSink or TENxRealizatio…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

Hi Koki, sorry for not seeing this before. > will SparseArraySeed in DelayedArray be replaced by this new sparse array format? Yes it wil…

Comment: Manual creation of qPCRset does not work by Ed Siefker ▴ 230

Thanks! This works for me.

Votes

Comment: List of Deprecated Packages for Bioc3.18

Answer: Manual creation of qPCRset does not work

Answer: MDS plot edgeR

A: legend with gradient in ComplexHeatmap

Comment: comparing contrasts in edger/lima using makeContrasts function

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