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metadata
•
reset
1
vote
2
replies
1.0k
views
Obtain metadata for software packages in Bioconductor
metadata
3.5 years ago
Donghui
▴ 10
2
votes
2
replies
1.5k
views
How to access metadata of GAlignments objects
rtracklayer
Rsamtools
GAlignments
GRanges
metadata
updated 4.6 years ago by
Hervé Pagès
16k • written 4.6 years ago by
Robert
▴ 10
2
votes
1
reply
1.5k
views
combining columns for experimental design in DESeq2
deseq2
design
metadata
updated 4.9 years ago by
sebastian.lobentanzer
▴ 50 • written 4.9 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
1.3k
views
Recount2 TCGA metadata missing sample, run and experiment columns
recount
metadata
tcga
updated 6.8 years ago by
rosabellascottgm
• 0 • written 6.8 years ago by
Mariela Cortés-López
• 0
2
votes
2
replies
1.7k
views
[VariantAnnotation] Preserve query metadata with locateVariants()
variantannotation
locatevariants
metadata
mcols
updated 7.0 years ago by
Valerie Obenchain
★ 6.8k • written 7.0 years ago by
enricoferrero
▴ 660
4
votes
3
replies
5.3k
views
What is the proper way to modify mcols of a GRanges inside a GRangesList?
granges
metadata
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.6 years ago by
Ryan C. Thompson
★ 7.9k
0
votes
4
replies
1.4k
views
Data structure for my dataset
metadata
grangeslist
granges
sample
updated 7.6 years ago by
Michael Lawrence
★ 11k • written 7.6 years ago by
Sim1pall8a
• 0
1
vote
2
replies
2.2k
views
Subsetting GRanges based on metadata
GRanges
metadata
subsetting
updated 8.3 years ago by
Michael Lawrence
★ 11k • written 8.3 years ago by
mdeea123
▴ 10
3
votes
7
replies
2.1k
views
Group GRanges and keep metadata
granges
metadata
coursera
updated 8.5 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
likeeatingpizza
▴ 10
4
votes
2
replies
1.5k
views
distinguish DataSource from Provider and ProviderVersion in makeTxDbPackage
genomicfeatures
txdb
maketxdbfromgff
metadata
updated 8.6 years ago by
Valerie Obenchain
★ 6.8k • written 8.6 years ago by
TimothéeFlutre
▴ 80
2
votes
3
replies
2.5k
views
Metadata Missing from vcf when reading in with readVcfAsVRanges
variantannotation
vranges
readvcf
readvcfasvranges
metadata
9.8 years ago
summerela
• 0
1
vote
3
replies
2.2k
views
Fast way to access metadata for GRangesList?
grangeslist
metadata
10.1 years ago
Robert K. Bradley
▴ 40
12 results • Page
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Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square
by
Michael Love
43k
I would check the rank of your model matrix, and perhaps meet with a local statistician who can help you create an appropriate design matri…
Comment: sva: get a sv for RIN scores
by
gabriel.hoffman
▴ 170
Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.
Comment: RSubread output significantly different from bash Subread output
by
Aimee
• 0
Thank you! I will try rerunning with that parameter and see if it fixes the discrepancy! I'll report back. Update: This completely resolve…
Answer: RSubread output significantly different from bash Subread output
by
ATpoint
★ 4.6k
The R version counts multimappers (countMultiMappingReads is TRUE by default) while the command line version does not. It's beyond me why t…
Comment: Can't post a question?
by
Aimee
• 0
I copied my text to a file in linux and ran: ```r grep --color='auto' -P -n "[^\x00-\x7F]" filename.txt ``` It highlighted everything that…
Votes
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: How to annotate a limma Elist raw class object with an annotation file
Comment: How to annotate a limma Elist raw class object with an annotation file
QSEA- Extraction of Normalized methylation across the samples
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Michael Love
43k
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Dario Strbenac
★ 1.5k
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to
ATpoint
★ 4.6k
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Gordon Smyth
52k
Popular Question
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bhandary.8590
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