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VariantAnnotation
•
reset
0
votes
0
replies
107
views
Cannot use `readVcf()` on a file created with `writeVcf()`
VariantAnnotation
5 weeks ago
Stevie Pederson
• 0
0
votes
1
reply
167
views
Is random access by row index possible for an indexed VCF file?
Rsamtools
VariantAnnotation
updated 10 weeks ago by
James W. MacDonald
66k • written 10 weeks ago by
maltethodberg
▴ 180
0
votes
0
replies
180
views
RFC: significant changes to ensemblVEP package
VariantAnnotation
ensemblVEP
4 months ago
Vincent J. Carey, Jr.
6.7k
0
votes
5
replies
515
views
locateVariant from VariantAnnotation returns wrong results
VariantAnnotation
locateVariant
updated 5 months ago by
James W. MacDonald
66k • written 5 months ago by
nhaus
▴ 40
0
votes
0
replies
491
views
Variant Filtering on very large VCF files
VariantAnnotation
VariantFiltering
8 months ago
Bogdan
▴ 670
2
votes
3
replies
1.1k
views
readVcf(remoteFile, "hg19", "region") works on macos, fails on linux and in docker
open.BcfFile
VariantAnnotation
updated 4 months ago by
Alex
• 0 • written 2.9 years ago by
Paul Shannon
▴ 470
2
votes
2
replies
1.5k
views
Matching Variants Between Two VCF Objects
VariantAnnotation
written 3.5 years ago by
Dario Strbenac
★ 1.5k
4
votes
9
replies
3.1k
views
Create protein sequences including variants from a VCF file
VariantAnnotation
customProDB
updated 8 days ago by
Yun
• 0 • written 5.2 years ago by
daniel.magnus.bader
▴ 50
8 results • Page
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Comment: Volcano plot of scRNA-seq data not "centered"
by
Michael Love
42k
Agree with @atpoint Depending on the "groups" in single cell, the question of DE can be not well defined without inserting additional inf…
Answer: Volcano plot of scRNA-seq data not "centered"
by
ATpoint
★ 4.2k
Sounds like a normalization problem, but I am not sure how to help with that. Indeed you can use control genes, for example use the top 20%…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
ATpoint
★ 4.2k
I was talking about the command line version.
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
atan
• 0
I tried reading in the .csv version of the SAF with header = F and I'm still getting an error. I'm running: ``` counts <- featureCounts( …
Comment: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
by
jovel_juan
▴ 30
enrichPlot requirements are rather low. All what it needs is to provide few columns named specifically. I student of mine wrote the first v…
Votes
Answer: Documenting resources in an `ExperimentHub` package?
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
Seurat to SingleCellExperiment Converting error in MAC
Error when converting Seurat to SingleCellExperiment
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Gordon Smyth
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jovel_juan
▴ 30
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ATpoint
★ 4.2k
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▴ 720
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mgdrnl
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