Showing : acgh • reset
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how to analyse single chromosome array CGH data using HMM in aCGH library?
aCGH CGH aCGH aCGH CGH aCGH
18.9 years ago Ruppert Valentino ▴ 270
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701
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acgh process problem
aCGH Cancer aCGH aCGH Cancer aCGH
18.9 years ago Daniel Brewer ★ 1.9k
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aCGH data format
aCGH aCGH aCGH aCGH
19.0 years ago Lee, Jason Thanh ▴ 20
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1.6k
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imputing missing data for 70mer array platform, need advice
aCGH CGH multtest impute aCGH oligo aCGH CGH multtest impute aCGH oligo
updated 19.0 years ago by 21k • written 19.0 years ago by ▴ 50
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flagging spots in marray
aCGH Microarray Normalization GO Cancer Biobase annotate genefilter affy affydata limma
19.1 years ago Gordon Smyth 53k
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1.1k
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Import GEO Soft format
aCGH Cancer aCGH aCGH Cancer aCGH
updated 19.1 years ago by ▴ 500 • written 19.1 years ago by ★ 1.9k
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1.2k
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aCGH install requied sma
aCGH aCGH aCGH aCGH
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 20
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953
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aCGH across samples
aCGH Cancer CGH aCGH aCGH Cancer CGH aCGH
updated 19.2 years ago by 21k • written 19.2 years ago by ★ 1.9k
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aCGH
aCGH CGH impute aCGH aCGH CGH impute aCGH
19.2 years ago Sean Davis 21k
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Scripts to handle array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
updated 19.6 years ago by ▴ 140 • written 19.6 years ago by ▴ 310
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scripts to process array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
19.6 years ago Steven McKinney ▴ 310
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Bioconductor 1.8 for R 2.3.0 is released!
BiocViews aCGH SNP Microarray Annotation GO Clustering Cancer Yeast cdf probe RMAGEML
19.8 years ago Seth Falcon ★ 7.4k
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ANN: Bioconductor Release 1.7 is available
aCGH Microarray Annotation Classification annotate edd hexbin SAGElyzer Rgraphviz RMAGEML
updated 20.3 years ago by ▴ 190 • written 20.3 years ago by ★ 7.4k
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Problems with aCGH library
aCGH affy aCGH aCGH affy aCGH
20.5 years ago Justin Borevitz ▴ 170
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1.6k
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Problem installing rmutil/repeated
aCGH aCGH aCGH aCGH
20.6 years ago J-C. Marioni ▴ 30
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1.1k
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problem with getting the right plot in aCGH
aCGH aCGH aCGH aCGH
updated 20.6 years ago by ★ 1.8k • written 20.6 years ago by ▴ 30
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Detecting overrepresented genomic loci
aCGH Clustering CGH geneplotter DNAcopy aCGH GLAD aCGH Clustering CGH geneplotter aCGH
20.8 years ago Yi, Andrew ▴ 20
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help needed for aCGH package
aCGH aCGH aCGH aCGH
updated 20.9 years ago by 21k • written 20.9 years ago by ★ 7.4k
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help needed for aCGH package
aCGH Genetics aCGH aCGH Genetics aCGH
20.9 years ago Alberto Goldoni ▴ 360
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792
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aCGH problem
aCGH aCGH aCGH aCGH
21.2 years ago Christopher, Neil NIH/NCI ▴ 70
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891
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aCGH modify plotting method
aCGH aCGH aCGH aCGH
updated 21.2 years ago by 68k • written 21.2 years ago by ▴ 70
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5
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1.4k
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Problems with aCGH library
aCGH aCGH aCGH aCGH
21.2 years ago Christopher, Neil NIH/NCI ▴ 70
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1.4k
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problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.3 years ago rgentleman ★ 5.5k
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problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.3 years ago Goeman, J.J. MSTAT ▴ 150
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Errors w/ getBioC(develOK =TRUE) with R2.0 devel
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.4 years ago Matthew Hannah ▴ 940
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Errors w/ getBioC()
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.4 years ago Matthew Hannah ▴ 940
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Problems with aCGH package
aCGH Genetics Cancer CGH impute aCGH aCGH Genetics Cancer CGH impute aCGH
21.6 years ago grischa tödt ▴ 30
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Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
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Hi, This error usually occurs when the sample names in the CSV file do not exactly match the Green channel IDAT files. Please double-che…
Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Comment: limpa analysis advice by Gordon Smyth 53k
I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
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Comment: Normalise to a housekeeping gene in DESEq2
Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
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