Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
allelicimbalance
•
reset
5
votes
7
replies
2.1k
views
Allele Specific Expression Using edgeR
edger
allelicimbalance
8.0 years ago
ugwu.nelson
▴ 10
0
votes
1
reply
1.1k
views
AlleicImbalance error reading in BAM files
allelicimbalance
updated 9.3 years ago by
Martin Morgan
25k • written 9.3 years ago by
JK
▴ 10
0
votes
2
replies
1.2k
views
AllelicImbalance error with getAlleleCounts
allelicimbalance
getallelecounts
updated 9.2 years ago by
Valerie Obenchain
★ 6.8k • written 9.3 years ago by
JK
▴ 10
0
votes
2
replies
1.3k
views
Error message from 'scanForHeterozygotes' function in AllelicImbalance package
allelicimbalance
updated 8.9 years ago by
Jesper Robert Gadin
▴ 20 • written 9.2 years ago by
JK
▴ 10
0
votes
2
replies
1.5k
views
Error using 'scanForHeterozygotes' function in AllelicImbalance package
allelicimbalance
updated 8.9 years ago by
Jesper Robert Gadin
▴ 20 • written 9.1 years ago by
JK
▴ 10
1
vote
1
reply
983
views
Does the AI package also allow more than one seqlevel?
AllelicImbalance
updated 8.5 years ago by
lasfol
▴ 10 • written 8.5 years ago by
sannysandra93
• 0
0
votes
4
replies
1.4k
views
AllelicImbalance with VCFs?
RNASeq
Cancer
trio
AllelicImbalance
RNASeq
Cancer
trio
AllelicImbalance
updated 10.3 years ago by
Jesper Robert Gadin
▴ 20 • written 10.3 years ago by
Tim Triche, Jr.
▴ 10
1
vote
1
reply
960
views
DESeq2 for allele-specific expression with contrasts between conditions
DESeq2
AllelicImbalance
edgeR
RNASeq
updated 2.9 years ago by
Michael Love
41k • written 2.9 years ago by
Katya
• 0
8 results • Page
1 of 1
Recent ...
Replies
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Votes
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Awards
• All
Popular Question
to
James W. MacDonald
65k
Scholar
to
Michael Love
41k
Supporter
to
JKim
• 0
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Chris
• 0
Locations
• All
Germany,
5 minutes ago
United States,
15 minutes ago
United States,
20 minutes ago
France,
25 minutes ago
United States,
26 minutes ago
Traffic: 1064 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6