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Nominations for Bioconductor Awards 2024!
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5 weeks ago
shepherl
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9 weeks ago • updated 8 weeks ago
shepherl
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shepherl
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shepherl
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shepherl
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Bioconductor
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shepherl
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Bioc2021
3.0 years ago
shepherl
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801
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shepherl
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750
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shepherl
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shepherl
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shepherl
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4.0 years ago • updated 3.9 years ago
shepherl
3.8k
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Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! That is a great tip. cameraRes <- camera(numeric_matrix, geneSets, inter.gene.cor=0.01, design) Error in Stat[iset]…
Answer: Help with error using camera() in limma
by
James W. MacDonald
65k
The first step should be to read the help page, which says ``` Usage: ## Default S3 method: camera(y, index, design, cont…
Comment: Assist me in determining whether the analysis process using the limma package ha
by
James W. MacDonald
65k
The description of the analysis says there are 120 genes at a 1.5 fold change and a p<0.05. They don't mention any multiplicity correction.…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
When using `arrayWeights()`, you mean the variability within the same group, is that correct? I alway run `arrayWeights()` because I naive …
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Sey R.
• 0
Thank you for your response
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Answer: Help with error using camera() in limma
Answer: Help with error using camera() in limma
Comment: Why p value inconsistent when using different number of pathway score?
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Answer: Improving the design matrices vignette in RNAseq123
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