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barplot
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2
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padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot
barplot
clusterProfiler
5 weeks ago
Eva
▴ 10
0
votes
0
replies
433
views
How to draw module significance barplot?
module_significance
barplot
WGCNA
14 months ago
Sooni
▴ 10
0
votes
1
reply
2.3k
views
how to sort y-axis category of GO result
GO.db
clusterProfiler
dotplot
barplot
2.5 years ago
Yang
• 0
4
votes
2
replies
6.7k
views
How to export enrichGO results for future visualization with barplot, dotplot, emapplot...
clusterprofiler
enrichGO
barplot
dotplot
5.7 years ago
MAP
• 0
0
votes
2
replies
2.9k
views
barplot with ggplot2 for gene expression
ggplot2
barplot
gene expression
gene expression
updated 8.7 years ago by
James W. MacDonald
65k • written 8.7 years ago by
alakatos
▴ 130
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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