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baseMean
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How to find Top 10 expressed genes in DESeq2
deseq2
baseMean
differential gene expression
rnaseqgene
updated 5.3 years ago by
swbarnes2
★ 1.3k • written 5.3 years ago by
melkile26
• 0
1
vote
6
replies
3.9k
views
BaseMean threshold
basemean
DESeq2
updated 19 months ago by
ATpoint
★ 4.1k • written 2.0 years ago by
msellabenton
• 0
5
votes
9
replies
1.9k
views
DESeq2 baseMean from DiffBind summarizedExperiment
deseq2
diffbind
basemean
summarizedexperiment
5.8 years ago
rbronste
▴ 60
0
votes
1
reply
1.3k
views
DESeq2: same count matrix, different design
deseq2
baseMean
cooks distance
updated 6.3 years ago by
Michael Love
41k • written 6.3 years ago by
da.de
▴ 30
0
votes
1
reply
901
views
Basemean always multiples of 0.5 in deseq2 results
deseq
results
baseMean
updated 5.8 years ago by
Michael Love
41k • written 5.8 years ago by
batmaiden
• 0
0
votes
1
reply
434
views
Can I use baseMean (from DESeq2) as part of presenting/ interpreting results
DESeq2
diferentialabundance
16srRNA
baseMean
updated 12 months ago by
Michael Love
41k • written 12 months ago by
PhD_student_microbiome
• 0
6 results • Page
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Answer: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function?
by
Henrik Bengtsson
★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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